Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3n04
         (267 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    25   2.4  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    24   3.1  
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    23   7.2  
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom...    23   7.2  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    23   9.6  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    23   9.6  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    23   9.6  
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac...    23   9.6  

>SPBC1718.02 |hop1||linear element associated protein
          Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 40 SVLC*GRACFNENC 81
          S LC  RA FNENC
Sbjct: 26 STLCYKRALFNENC 39


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 123  RLHSHWFNRIRSLSRLSY 176
            RL SHW   +R  SRL +
Sbjct: 1404 RLSSHWIMALRGYSRLQF 1421


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -3

Query: 175 YERRDKERIRLNQ 137
           Y +R++ERIRLN+
Sbjct: 61  YRQRERERIRLNR 73


>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +2

Query: 230 HTIYINNLNEK 262
           +T+Y+NNLN+K
Sbjct: 4   NTLYVNNLNDK 14


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 78  LPRPVKRIWKYPI*F 122
           LP PVK++W + + F
Sbjct: 491 LPLPVKQVWSHTVTF 505


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 175 IKNKT*FCNQNDNGYKTQPYHLYQ 246
           IKNK    N+ DNG + +P HL Q
Sbjct: 44  IKNK----NKLDNGNEIEPQHLSQ 63


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 113 WILPNSFYRSR 81
           W+L NSF+R+R
Sbjct: 357 WLLDNSFFRNR 367


>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 256 IEIIDINGMVGSYIHCHFDYKTK 188
           +E +  N + G+  HC FD++ K
Sbjct: 10  LEALSQNLLPGNQNHCSFDFQLK 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,077,133
Number of Sequences: 5004
Number of extensions: 19154
Number of successful extensions: 54
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)