Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3n04
(267 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0694 - 10448712-10448996,10449030-10449074,10449588-104496... 30 0.29
05_01_0398 + 3142934-3143110,3143697-3143930,3144180-3144353,314... 29 0.51
01_04_0103 + 16046012-16046018,16046214-16046366,16046908-160471... 28 0.89
05_03_0211 + 10236867-10237075,10238036-10238270,10238433-102386... 26 4.8
08_02_1130 + 24517319-24518149,24519374-24519868,24519954-245201... 25 6.3
05_03_0017 - 7392742-7393110,7393212-7393319,7393522-7394079,739... 25 6.3
04_04_1427 + 33491847-33491888,33493504-33493623,33493740-334939... 25 6.3
03_02_0355 + 7764043-7764189,7764867-7764942,7766151-7766362 25 8.3
03_01_0053 + 457622-458191,458328-458393,458734-458978,459393-45... 25 8.3
02_05_1079 + 33950290-33950337,33950418-33952586,33952690-339527... 25 8.3
>03_02_0694 -
10448712-10448996,10449030-10449074,10449588-10449647,
10449817-10449890,10451056-10451149,10451851-10452023,
10452526-10452598
Length = 267
Score = 29.9 bits (64), Expect = 0.29
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 215 DIRPNHTIYINNLNEK 262
DI PN T+Y+ NLNEK
Sbjct: 5 DIPPNQTVYLRNLNEK 20
>05_01_0398 +
3142934-3143110,3143697-3143930,3144180-3144353,
3144450-3144554,3145274-3145351,3146019-3146100,
3146519-3146681,3147100-3147435,3147511-3147641,
3147687-3147729,3147826-3148444,3148523-3148588,
3149103-3149265,3149557-3149635,3150232-3150431,
3150972-3151144,3151466-3151559,3152353-3152444,
3153146-3153436
Length = 1099
Score = 29.1 bits (62), Expect = 0.51
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +2
Query: 224 PNHTIYINNLNEK 262
PN TIYINNLNEK
Sbjct: 867 PNVTIYINNLNEK 879
>01_04_0103 +
16046012-16046018,16046214-16046366,16046908-16047158,
16047509-16047631,16047818-16047931,16048153-16048315,
16048867-16049462
Length = 468
Score = 28.3 bits (60), Expect = 0.89
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 244 DINGMVGSYIHCHFDYKT 191
D NG V S +HCH D KT
Sbjct: 208 DGNGSVASEVHCHHDAKT 225
>05_03_0211 +
10236867-10237075,10238036-10238270,10238433-10238602,
10240324-10240466,10240590-10240767,10241441-10242008,
10243001-10243113,10244521-10244764,10245201-10245278,
10246500-10246727
Length = 721
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 267 FFFSLRLLI*MVWLGLISIVILITKLSFVFYTR 169
F FS +I WL +++L+ +F+F+TR
Sbjct: 529 FCFSSSYIIIRGWLVYFLVLVLLFSATFMFFTR 561
>08_02_1130 +
24517319-24518149,24519374-24519868,24519954-24520179,
24520267-24520291,24520925-24521234,24521328-24521888
Length = 815
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 178 LYERRDKERIRLNQCE*RRNQIGYFQILFTG 86
+Y+R++ + IR + E R +I Y Q L+ G
Sbjct: 303 IYKRKNSDPIRYSLLEKNRERIVYLQKLYCG 333
>05_03_0017 -
7392742-7393110,7393212-7393319,7393522-7394079,
7394186-7394311,7394396-7394521,7394673-7395137,
7396822-7396901,7397394-7397664
Length = 700
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3
Query: 66 FQRKLPRPVKRIWKYPI*FRLHSHW 140
F R LP K W+YP+ + ++ W
Sbjct: 551 FFRLLPELPKIFWRYPVSYIVYGSW 575
>04_04_1427 +
33491847-33491888,33493504-33493623,33493740-33493976,
33494754-33495638,33495733-33495837,33495920-33496064,
33496146-33496310,33496391-33496629,33496724-33496756,
33496840-33496921,33497017-33497177,33497282-33497455,
33497549-33497731,33497832-33498019,33498155-33498251
Length = 951
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -3
Query: 121 NQIGYFQILFTGLGSF 74
NQ+G+FQ + T +G+F
Sbjct: 231 NQVGHFQTVLTAIGNF 246
>03_02_0355 + 7764043-7764189,7764867-7764942,7766151-7766362
Length = 144
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 157 PCHASRIKNKT*FCNQNDNGYKTQP 231
P H I N T F Q+DNG K P
Sbjct: 62 PVHFDIIFNHTIFGYQDDNGVKASP 86
>03_01_0053 +
457622-458191,458328-458393,458734-458978,459393-459861
Length = 449
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 81 PRPVKRIWKYPI*FRLHSHW 140
PRP RI+ Y + R + HW
Sbjct: 70 PRPALRIYVYDLPARFNRHW 89
>02_05_1079 +
33950290-33950337,33950418-33952586,33952690-33952780,
33952955-33953435,33954249-33954345
Length = 961
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -3
Query: 121 NQIGYFQILFTGLGSF 74
N IG+FQ++ T +G+F
Sbjct: 233 NNIGHFQLVLTAIGNF 248
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,275,977
Number of Sequences: 37544
Number of extensions: 102457
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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