Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3n04
(267 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M15841-1|AAA36796.1| 225|Homo sapiens protein ( Human U2 small ... 40 0.002
BC036737-1|AAH36737.1| 225|Homo sapiens small nuclear ribonucle... 40 0.002
BC018022-1|AAH18022.1| 225|Homo sapiens small nuclear ribonucle... 40 0.002
BC008311-1|AAH08311.1| 109|Homo sapiens Similar to small nuclea... 40 0.002
AL034428-1|CAB38777.2| 225|Homo sapiens small nuclear ribonucle... 40 0.002
X06347-1|CAA29653.1| 282|Homo sapiens protein ( Human mRNA for ... 36 0.023
M60784-1|AAA61245.1| 282|Homo sapiens U1 snRNP-specific protein... 36 0.023
BC008290-1|AAH08290.1| 282|Homo sapiens small nuclear ribonucle... 36 0.023
BC000405-1|AAH00405.1| 282|Homo sapiens small nuclear ribonucle... 36 0.023
BX682530-2|CAM25946.1| 252|Homo sapiens proteasome (prosome, ma... 28 6.2
BX088556-2|CAM26260.1| 252|Homo sapiens proteasome (prosome, ma... 28 6.2
AL935043-3|CAI18624.1| 252|Homo sapiens proteasome (prosome, ma... 28 6.2
AL671681-10|CAM24978.1| 252|Homo sapiens proteasome (prosome, m... 28 6.2
AL669918-5|CAM25484.1| 252|Homo sapiens proteasome (prosome, ma... 28 6.2
>M15841-1|AAA36796.1| 225|Homo sapiens protein ( Human U2 small
nuclear RNA-associated B'' antigen mRNA, complete cds.
).
Length = 225
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +2
Query: 212 MDIRPNHTIYINNLNEK 262
MDIRPNHTIYINN+N+K
Sbjct: 1 MDIRPNHTIYINNMNDK 17
>BC036737-1|AAH36737.1| 225|Homo sapiens small nuclear
ribonucleoprotein polypeptide B'' protein.
Length = 225
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +2
Query: 212 MDIRPNHTIYINNLNEK 262
MDIRPNHTIYINN+N+K
Sbjct: 1 MDIRPNHTIYINNMNDK 17
>BC018022-1|AAH18022.1| 225|Homo sapiens small nuclear
ribonucleoprotein polypeptide B'' protein.
Length = 225
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +2
Query: 212 MDIRPNHTIYINNLNEK 262
MDIRPNHTIYINN+N+K
Sbjct: 1 MDIRPNHTIYINNMNDK 17
>BC008311-1|AAH08311.1| 109|Homo sapiens Similar to small nuclear
ribonucleoprotein polypeptide B'' protein.
Length = 109
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +2
Query: 212 MDIRPNHTIYINNLNEK 262
MDIRPNHTIYINN+N+K
Sbjct: 1 MDIRPNHTIYINNMNDK 17
>AL034428-1|CAB38777.2| 225|Homo sapiens small nuclear
ribonucleoprotein polypeptide B'' protein.
Length = 225
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +2
Query: 212 MDIRPNHTIYINNLNEK 262
MDIRPNHTIYINN+N+K
Sbjct: 1 MDIRPNHTIYINNMNDK 17
>X06347-1|CAA29653.1| 282|Homo sapiens protein ( Human mRNA for U1
small nuclear RNP-specific A protein. ).
Length = 282
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2
Query: 215 DIRPNHTIYINNLNEK 262
+ RPNHTIYINNLNEK
Sbjct: 5 ETRPNHTIYINNLNEK 20
>M60784-1|AAA61245.1| 282|Homo sapiens U1 snRNP-specific protein A
protein.
Length = 282
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2
Query: 215 DIRPNHTIYINNLNEK 262
+ RPNHTIYINNLNEK
Sbjct: 5 ETRPNHTIYINNLNEK 20
>BC008290-1|AAH08290.1| 282|Homo sapiens small nuclear
ribonucleoprotein polypeptide A protein.
Length = 282
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2
Query: 215 DIRPNHTIYINNLNEK 262
+ RPNHTIYINNLNEK
Sbjct: 5 ETRPNHTIYINNLNEK 20
>BC000405-1|AAH00405.1| 282|Homo sapiens small nuclear
ribonucleoprotein polypeptide A protein.
Length = 282
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2
Query: 215 DIRPNHTIYINNLNEK 262
+ RPNHTIYINNLNEK
Sbjct: 5 ETRPNHTIYINNLNEK 20
>BX682530-2|CAM25946.1| 252|Homo sapiens proteasome (prosome,
macropain) subunit beta typescript) 2 protein.
Length = 252
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 256 IEIIDINGMVGSYIHCHFDYK--TKFCFLYERRDKERIRLN 140
I +D GSYI+C + + K C LY R+ ERI ++
Sbjct: 85 IAAVDSRASAGSYINCQYWERLLAKECRLYYLRNGERISVS 125
>BX088556-2|CAM26260.1| 252|Homo sapiens proteasome (prosome,
macropain) subunit beta typepseudogene protein.
Length = 252
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 256 IEIIDINGMVGSYIHCHFDYK--TKFCFLYERRDKERIRLN 140
I +D GSYI+C + + K C LY R+ ERI ++
Sbjct: 85 IAAVDSRASAGSYINCQYWERLLAKECRLYYLRNGERISVS 125
>AL935043-3|CAI18624.1| 252|Homo sapiens proteasome (prosome,
macropain) subunit, beta type, 8 (large multifunctional
pe protein.
Length = 252
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 256 IEIIDINGMVGSYIHCHFDYK--TKFCFLYERRDKERIRLN 140
I +D GSYI+C + + K C LY R+ ERI ++
Sbjct: 85 IAAVDSRASAGSYINCQYWERLLAKECRLYYLRNGERISVS 125
>AL671681-10|CAM24978.1| 252|Homo sapiens proteasome (prosome,
macropain) subunit, beta type, 8 (large multifunctional
pe protein.
Length = 252
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 256 IEIIDINGMVGSYIHCHFDYK--TKFCFLYERRDKERIRLN 140
I +D GSYI+C + + K C LY R+ ERI ++
Sbjct: 85 IAAVDSRASAGSYINCQYWERLLAKECRLYYLRNGERISVS 125
>AL669918-5|CAM25484.1| 252|Homo sapiens proteasome (prosome,
macropain) subunit, beta type, 8 (large multifunctional
pe protein.
Length = 252
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 256 IEIIDINGMVGSYIHCHFDYK--TKFCFLYERRDKERIRLN 140
I +D GSYI+C + + K C LY R+ ERI ++
Sbjct: 85 IAAVDSRASAGSYINCQYWERLLAKECRLYYLRNGERISVS 125
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,171,867
Number of Sequences: 237096
Number of extensions: 661946
Number of successful extensions: 806
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 76,859,062
effective HSP length: 66
effective length of database: 61,210,726
effective search space used: 1346635972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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