Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3n04
         (267 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M89775-1|AAA28441.1|  216|Drosophila melanogaster small nuclear ...    33   0.072
L29521-1|AAA28903.1|  216|Drosophila melanogaster nuclear protei...    33   0.072
AY061491-1|AAL29039.1|  216|Drosophila melanogaster LD45302p pro...    33   0.072
AE014298-717|AAF46017.1|  216|Drosophila melanogaster CG4528-PA ...    33   0.072

>M89775-1|AAA28441.1|  216|Drosophila melanogaster small nuclear
           ribonucleoprotein protein.
          Length = 216

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2

Query: 212 MDIRPNHTIYINNLNEK 262
           M++ PN TIYINNLNEK
Sbjct: 1   MEMLPNQTIYINNLNEK 17


>L29521-1|AAA28903.1|  216|Drosophila melanogaster nuclear protein
           protein.
          Length = 216

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2

Query: 212 MDIRPNHTIYINNLNEK 262
           M++ PN TIYINNLNEK
Sbjct: 1   MEMLPNQTIYINNLNEK 17


>AY061491-1|AAL29039.1|  216|Drosophila melanogaster LD45302p
           protein.
          Length = 216

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2

Query: 212 MDIRPNHTIYINNLNEK 262
           M++ PN TIYINNLNEK
Sbjct: 1   MEMLPNQTIYINNLNEK 17


>AE014298-717|AAF46017.1|  216|Drosophila melanogaster CG4528-PA
           protein.
          Length = 216

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2

Query: 212 MDIRPNHTIYINNLNEK 262
           M++ PN TIYINNLNEK
Sbjct: 1   MEMLPNQTIYINNLNEK 17


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,769,621
Number of Sequences: 53049
Number of extensions: 187078
Number of successful extensions: 345
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 24,988,368
effective HSP length: 67
effective length of database: 21,434,085
effective search space used: 450115785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)