Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3n04
(267 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 37 0.002
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 31 0.15
Z93372-1|CAB07548.1| 324|Caenorhabditis elegans Hypothetical pr... 26 3.2
U28993-3|AAT81196.1| 635|Caenorhabditis elegans Hypothetical pr... 26 3.2
U28993-2|AAK31497.1| 720|Caenorhabditis elegans Hypothetical pr... 26 3.2
Z81584-7|CAE17905.1| 202|Caenorhabditis elegans Hypothetical pr... 25 5.6
U50300-4|AAC48111.1| 351|Caenorhabditis elegans Serpentine rece... 25 7.4
AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical ... 25 7.4
Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical pr... 25 9.7
U40798-2|AAQ01525.2| 389|Caenorhabditis elegans Hypothetical pr... 25 9.7
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2
Query: 215 DIRPNHTIYINNLNEK 262
DI PNHTIY+NNLNEK
Sbjct: 3 DINPNHTIYVNNLNEK 18
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 30.7 bits (66), Expect = 0.15
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 215 DIRPNHTIYINNLNEK 262
++ PN T+YINNLNEK
Sbjct: 3 EVAPNSTLYINNLNEK 18
>Z93372-1|CAB07548.1| 324|Caenorhabditis elegans Hypothetical
protein BE10.1 protein.
Length = 324
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Frame = +1
Query: 64 CFNENCLDL*KEFG-------SIQFDSAFTHIGSIEFVPCHASRIKNK 186
C NE C+ L K G S S ++ G+IE +P H +KN+
Sbjct: 189 CCNEYCIQLAKANGDKVCVGQSESVTSNISYAGAIESIPIHVCILKNQ 236
>U28993-3|AAT81196.1| 635|Caenorhabditis elegans Hypothetical
protein F22D3.2b protein.
Length = 635
Score = 26.2 bits (55), Expect = 3.2
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = -1
Query: 222 LISIVILITKLSFVFYTRGVTRNEFD*TNVSEGGIKLDTSKFFLQV*AVFVETGASLAQN 43
L S++++ L+F+ N F+ + GGIK D K V + ++TG L+++
Sbjct: 256 LFSLIVVSNDLTFL-------TNNFEYFKTTLGGIKNDLQKLAQDVFSREIDTGEKLSED 308
Query: 42 TITSSE 25
I E
Sbjct: 309 DIHKPE 314
>U28993-2|AAK31497.1| 720|Caenorhabditis elegans Hypothetical
protein F22D3.2a protein.
Length = 720
Score = 26.2 bits (55), Expect = 3.2
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = -1
Query: 222 LISIVILITKLSFVFYTRGVTRNEFD*TNVSEGGIKLDTSKFFLQV*AVFVETGASLAQN 43
L S++++ L+F+ N F+ + GGIK D K V + ++TG L+++
Sbjct: 256 LFSLIVVSNDLTFL-------TNNFEYFKTTLGGIKNDLQKLAQDVFSREIDTGEKLSED 308
Query: 42 TITSSE 25
I E
Sbjct: 309 DIHKPE 314
>Z81584-7|CAE17905.1| 202|Caenorhabditis elegans Hypothetical
protein T04C12.7 protein.
Length = 202
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 231 WLGLISIVILITKLSFVFYTRGVTR 157
WL + IVI I+ L+F FY G R
Sbjct: 66 WLIITGIVIFISALNFPFYLIGWRR 90
>U50300-4|AAC48111.1| 351|Caenorhabditis elegans Serpentine
receptor, class h protein201 protein.
Length = 351
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 70 NENCLDL*KEFGSIQFDSAFTHIGSIEFVPCHA 168
N C+ FGS QF S HI S+ P H+
Sbjct: 9 NITCIPQEDYFGSPQFYSTSMHIVSVIATPIHS 41
>AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical
protein Y32F6A.4 protein.
Length = 519
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 231 WLGLISIVILITKLSFVFYTRGVTRN 154
W GLI VILI +++ Y G++ N
Sbjct: 86 WTGLIVCVILIGVVTYTAYVLGLSWN 111
>Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -1
Query: 231 WLGLISIVILITKLSFVFYTRGVTRNEF 148
W+ LIS+ ++I + F+ RN F
Sbjct: 768 WIALISLTVIIISIQFLLVIYICLRNRF 795
>Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -1
Query: 231 WLGLISIVILITKLSFVFYTRGVTRNEF 148
W+ LIS+ ++I + F+ RN F
Sbjct: 768 WIALISLTVIIISIQFLLVIYICLRNRF 795
>U40798-2|AAQ01525.2| 389|Caenorhabditis elegans Hypothetical
protein R13A1.9 protein.
Length = 389
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 237 MVWLGLISIVILITKLSF 184
+VW+GL + + LI LSF
Sbjct: 37 LVWIGLYTAIALIINLSF 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,787,859
Number of Sequences: 27780
Number of extensions: 103976
Number of successful extensions: 254
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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