Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3n04
         (267 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   1.5  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   3.5  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   3.5  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   3.5  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   3.5  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   3.5  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   3.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   3.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    20   6.1  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    19   8.0  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 122 ESNWILPNSF 93
           +SNWI+ NSF
Sbjct: 30  DSNWIITNSF 39


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 169 SRIKNKT*FCNQNDNGYKTQPYHL 240
           S + N   + N N+N YK   Y++
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLCYNI 106


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 169 SRIKNKT*FCNQNDNGYKTQPYHL 240
           S + N   + N N+N YK   Y++
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLCYNI 106


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 169 SRIKNKT*FCNQNDNGYKTQPYHL 240
           S + N   + N N+N YK   Y++
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLCYNI 106


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 169 SRIKNKT*FCNQNDNGYKTQPYHL 240
           S + N   + N N+N YK   Y++
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLCYNI 106


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 169 SRIKNKT*FCNQNDNGYKTQPYHL 240
           S + N   + N N+N YK   Y++
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLCYNI 106


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 169 SRIKNKT*FCNQNDNGYKTQPYHL 240
           S + N   + N N+N YK   Y++
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLCYNI 106


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 101 LEVSNLIPPSLTLVQSNS 154
           LE S L PP+  L  SNS
Sbjct: 206 LEQSPLCPPAPRLTNSNS 223


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 42  CSVLGTRLFQRKLPRPVKRIWK 107
           CSV    +   +L  PVK  W+
Sbjct: 135 CSVNDVNMTITELTDPVKEFWE 156


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 227 NHTIYINNLNEK 262
           N+TI+ NN N+K
Sbjct: 320 NNTIHNNNYNKK 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,511
Number of Sequences: 438
Number of extensions: 1342
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5012760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)