Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3m21
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    30   0.27 
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   1.9  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   1.9  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    27   2.5  
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    27   2.5  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    27   3.3  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    26   4.4  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.8  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
 Frame = +2

Query: 326  KVLRIID---STNAIRNYLLSGFSLCFVLVIWRSLDLIIFSAKLHELYDLMRNYDLID-I 493
            +V+RI +   +T  I N++++   L    V     DL+I       L D + NYD  D I
Sbjct: 1429 RVIRIFEKSENTPLILNFMVAIQHLNIQAVNHAYNDLLIEMEDYQSLQDSIENYDHFDAI 1488

Query: 494  TLMTEVEEKRDNESCLIDETIYEDDNVHWPSIIELNKTE 610
             L   +E+    E   I   IY   N  W   IEL+K +
Sbjct: 1489 ALARRLEKHSLLEFRRIAAYIYR-KNKRWTQSIELSKQD 1526


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 343 NDT*NFLFGRFIVLHKFWHFVFIQRPC 263
           NDT + LF   + LH F+H++ ++  C
Sbjct: 602 NDTSDLLFHSNVSLHLFYHYLIVKVSC 628


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = -1

Query: 297 NFGILYLFNVLVGPKIPYTAIIVQ*ITVKVLKSGLSRKISLYCLMYFERVITSK 136
           N   L++F +L+GP   Y A +V+ + V V +  + R  +    M +++V+TSK
Sbjct: 299 NSPFLWVFVLLIGP---YLASVVKELYVHVSRRFMLRIKAAITQMIYKKVLTSK 349


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = +2

Query: 74  ILLISMNIIQMVSI--LFLLLPIFDVITLSKYIKQYKEILRDRPLFRTFTVIYCTIIAVY 247
           +L+I+M +I+++ +  L + L   D ++L+  I   ++ +RD     T  ++  TI+ +Y
Sbjct: 393 VLIITM-LIELLHVGGLRIALSNRDDLSLTPLINFLRKYIRDPRFSETLCIVTSTILDIY 451

Query: 248 G 250
           G
Sbjct: 452 G 452


>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 344 DSTNA-IRNYLLSGFSLCFVLVIWRSLDLIIFSAKLH 451
           +STN  ++N+    F   FVLVIW+ L L  F  + H
Sbjct: 177 ESTNERVKNFAYLTFISLFVLVIWQILYLRSFFQRKH 213


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 105 WYPFYFYCCLFSMLLLSR 158
           W  F+F CCL S LL ++
Sbjct: 240 WRTFFFLCCLLSPLLTAK 257


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 95  YSWKSIISLCSLILTFYLKQK 33
           YSW   +SLC+L+ ++ L  K
Sbjct: 303 YSWTGTVSLCNLVSSWILNTK 323


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 80  LISMNIIQMV-SILFLLLPIFDVITLSKYIKQYKEILRDRPLFR 208
           L++ ++++++ S L LLL I    T+SK  KQ   + +DR LFR
Sbjct: 125 LLNSSVLEVIDSTLALLLHIVQKATISKRGKQLFSLSQDR-LFR 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,405
Number of Sequences: 5004
Number of extensions: 57309
Number of successful extensions: 202
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)