Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3m19
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   2.2  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   2.9  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.9  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    27   2.9  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    27   3.8  
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   3.8  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    26   5.0  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   5.0  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    26   6.6  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    26   6.6  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   6.6  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   6.6  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   8.7  

>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 712 SIVSSQPDKSKVRTFGRHRTALQI-AKHPASPSKHRW 605
           S V S   +S VR+  R R++    ++HP+S S+HR+
Sbjct: 135 SSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRY 171


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +3

Query: 549 LNPLCEAVLLNSSL---QHLYFQRCLLGDAGCLAICKAVRC-LPNV 674
           LNP    V  N  L    HLY ++CLL      +IC   RC LP V
Sbjct: 631 LNPASMMVRRNYMLTPCHHLYHRQCLLQWMETRSICPVCRCHLPAV 676


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 23  EYSTTKSNLFIVHF*YRSSKRETVILEDRTNVFLMIFEHGRQRCRTEEQPYI 178
           E ST+  N +I +    S   +T+ +ED+T+  +  FEH  +     E P I
Sbjct: 197 ETSTSVENAYITN----SQYNDTLDMEDQTSDLITTFEHENEDHEVHEVPSI 244


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 201 CKLQNFTPL-NNVLPTGNGKILDF 269
           CK+ +FTPL N + P   G+++D+
Sbjct: 99  CKVDDFTPLPNEIQPIQRGRVVDW 122


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 153 VEPKSSRIFQQCYAKCCKLQNFTPLNNVLPTGN 251
           ++PKS   F Q     C  QN+  LN     GN
Sbjct: 128 IKPKSDARFSQGLCTACTFQNYPDLNTCEICGN 160


>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 206

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -1

Query: 706 VSSQPDKSKVRTFGRHRTA--LQIAKHPASPSKHRWKY 599
           +S+Q  KSKVRT  R   A  L+  +H  S  + R +Y
Sbjct: 93  ISNQKPKSKVRTIQREEVADMLESVEHEKSIQEFRKRY 130


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 323 AQSVQYRRPISILNSIDAEIQYFSIPGWQHI 231
           A S++ R P++I    DA+I   S+P   H+
Sbjct: 484 ASSIRRRHPVNIQEDEDADISTVSLPEAAHL 514


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 564 EAVLLNSSLQHLYFQRCLLGDAGCLAICKAV-RCLPNVLTLDLSGCELT 707
           +A+L +SS   L + RC        +I K V   L ++++LDLSG ELT
Sbjct: 323 DAILSSSSWSQLLYLRC--SSCKLKSIPKNVFLSLQSLVSLDLSGNELT 369


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 255 KILDFCVDRIKYADWPPILNALSCDLSLHSIS 350
           + L + VD  +Y D  P   + S D+S H++S
Sbjct: 211 RTLPWAVDPYRYGDPDPKRTSTSADISQHTVS 242


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 525 LLPAMKSIGSYWTRVGISLRRDYS 454
           L+P + +I   WTR GI+ ++ YS
Sbjct: 477 LMPLIPTIRETWTRKGITQKQHYS 500


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +3

Query: 150  GVEPKSSRIFQQCYAKCCKLQNFTPLNNVLPTGNGKILDFCV 275
            G+E K  R  +Q  +    L N   L  VLPTG GK L F +
Sbjct: 1185 GLEAKF-RSLKQFQSVYFSLLNRMNLITVLPTGGGKSLSFLI 1225


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +3

Query: 150  GVEPKSSRIFQQCYAKCCKLQNFTPLNNVLPTGNGKILDFCV 275
            G+E K  R  +Q  +    L N   L  VLPTG GK L F +
Sbjct: 1185 GLEAKF-RSLKQFQSVYFSLLNRMNLITVLPTGGGKSLSFLI 1225


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 316  AFSIGGQSAYLILSTQKSNIFPFPVGSTL 230
            A  + G+  +LILST  SN   FP+ S +
Sbjct: 947  AVFVTGRKPFLILSTLHSNAKFFPISSNI 975


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,978,564
Number of Sequences: 5004
Number of extensions: 63593
Number of successful extensions: 216
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)