Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3m19
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0928 - 7159857-7159922,7159923-7160024,7160126-7160206,716... 35 0.060
04_03_0432 - 15861997-15862096,15862449-15862519,15862612-158627... 31 0.74
06_01_0412 + 2944652-2944977,2945406-2945517,2945569-2945670 31 0.98
03_01_0620 - 4566616-4567374,4567455-4567977,4568106-4568635 31 1.3
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 30 2.3
01_05_0387 - 21695277-21695351,21696186-21696228,21696325-216964... 29 3.0
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337... 29 3.9
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874... 29 3.9
02_04_0475 + 23229046-23229480,23230062-23231205,23232187-232323... 29 5.2
12_02_0641 + 21450262-21450603,21450691-21450963,21451600-214518... 28 6.9
12_02_0638 + 21439600-21439941,21440029-21440301,21440938-214412... 28 6.9
12_02_0636 + 21433109-21433450,21433538-21434089 28 6.9
03_05_0028 - 19988940-19989477,19989631-19989673,19990956-199910... 28 6.9
10_08_0029 + 14270945-14271364,14271449-14272486 28 9.1
05_06_0263 + 26752759-26754393 28 9.1
02_04_0036 + 19097693-19098106 28 9.1
>06_01_0928 -
7159857-7159922,7159923-7160024,7160126-7160206,
7160289-7160384,7160462-7160566,7160648-7160722,
7161372-7161431,7161960-7162090,7162175-7162250,
7163390-7163459,7163603-7163664,7163788-7163871,
7163973-7164047,7164448-7164585,7164733-7164791,
7164910-7165123,7167996-7168091,7168701-7169639
Length = 842
Score = 35.1 bits (77), Expect = 0.060
Identities = 17/66 (25%), Positives = 34/66 (51%)
Frame = +3
Query: 549 LNPLCEAVLLNSSLQHLYFQRCLLGDAGCLAICKAVRCLPNVLTLDLSGCELTMLGASYI 728
++ + E + NS + L +G G A+C ++ + TL L C++ + GA ++
Sbjct: 678 VSAIAETLKDNSVVTTLELSYNPIGPEGVKALCDVLKFNGKIQTLKLGWCQIGVSGAEFV 737
Query: 729 AELVKY 746
A+ +KY
Sbjct: 738 ADCLKY 743
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 558 LCEAVLLNSSLQHLYFQRCLLGDAGCLAICKAVRCLPNVLT-LDLSGCELTMLGASYIAE 734
L + +L N +L+ L+ G+ G A+ A+ +T LD+ +T G+ ++AE
Sbjct: 568 LAKGILGNKTLRELHLHGNGFGNEGVRALMSALSAHKGKITVLDIGNNNITSEGSLHVAE 627
Query: 735 LVK 743
+K
Sbjct: 628 FIK 630
>04_03_0432 -
15861997-15862096,15862449-15862519,15862612-15862774,
15865311-15865535,15866156-15866403,15866489-15866618,
15866716-15866975
Length = 398
Score = 31.5 bits (68), Expect = 0.74
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 642 LPNIPHLRASIVGSTSVGGNCLKGPPHIKDSNRGSSTAI 526
+PN+PH ++ S VGG LK P H+ D+ T I
Sbjct: 285 VPNMPHYNVNLK-SIDVGGTALKLPSHMFDTGEKKGTII 322
>06_01_0412 + 2944652-2944977,2945406-2945517,2945569-2945670
Length = 179
Score = 31.1 bits (67), Expect = 0.98
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 341 FYFYTMQAACENCTRTNRLRSTSKNCKQTSCDFNQ 445
F FY Q + RST KNCK +C FN+
Sbjct: 112 FIFYVFQNSSSTTYLVAVARSTQKNCKLQACRFNK 146
>03_01_0620 - 4566616-4567374,4567455-4567977,4568106-4568635
Length = 603
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 582 SSLQHLYFQRCLLGDAGCLAICKAVRCLPNVLTLDLSGCELTMLGASYIA 731
S L+ L + C GDAG L+ + N+ L +SGC LT+ G +A
Sbjct: 511 SKLEKLEIRDCPFGDAGLLS---GMHHFYNMRFLWMSGCNLTLQGCKEVA 557
>11_04_0236 + 15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 588 LQHLYFQRCLLGDAGCLAICKAVRCLPNVLTLDLSGCELTMLGASYIAE 734
LQ L + C GD G L+ + N+ L +S C +TM G Y+A+
Sbjct: 2410 LQKLEVRECPFGDEGLLS---GLSHFWNMRFLWMSSCRVTMTGCRYVAQ 2455
>01_05_0387 -
21695277-21695351,21696186-21696228,21696325-21696454,
21696812-21697028,21697202-21697248,21698132-21698228,
21698637-21698687,21698788-21698919,21699345-21699499,
21700461-21700534,21700566-21700730,21701368-21701420
Length = 412
Score = 29.5 bits (63), Expect = 3.0
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 267 FCVDRIKYADWPPI 308
FC++ KYADWPP+
Sbjct: 313 FCINDNKYADWPPL 326
>11_01_0442 -
3369827-3370168,3370608-3372616,3372953-3373277,
3373386-3373415
Length = 901
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 588 GNCLKGPPHIKDSNRGSSTAILLPAMKSIGSY 493
G+CL P ++ S+ S T++ + S+GSY
Sbjct: 864 GSCLSPIPRVQSSSTHSQTSVFSGGLSSLGSY 895
>04_04_0585 -
26386248-26386271,26386510-26386699,26387363-26387463,
26387554-26387685,26387759-26387857,26387956-26388127,
26388217-26388512,26388601-26388726,26388848-26389062,
26389154-26389225,26389299-26389368,26389441-26389517,
26389605-26389923,26390034-26390225,26390321-26390551,
26390585-26390950,26392251-26392313,26392394-26392456,
26392544-26392642,26393497-26393523,26394299-26394358,
26395230-26396147,26396243-26397268
Length = 1645
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 406 SRSQSICSSTVFTGCLHRIEIECRLKSQLKAFSIGGQSAYL 284
SRSQS C S + TG + R++ K+ ++ S GG+ ++
Sbjct: 663 SRSQSTCRSDLLTGKMPRVQTSRLGKNPIEVDSDGGEDFHV 703
>02_04_0475 +
23229046-23229480,23230062-23231205,23232187-23232334,
23232776-23234225
Length = 1058
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +3
Query: 567 AVLLNSSLQHLYFQRCLLGDAGCLAICKAVRCLPNVLTLDLSGCELTMLGASYIAEL 737
AV + LQ+L RC + + + + +R L ++ TLD+SGC+ + I E+
Sbjct: 606 AVCCLTKLQYLNLSRC----SSLIHLPETIRGLKDLHTLDISGCQWIEIFPKSICEI 658
>12_02_0641 +
21450262-21450603,21450691-21450963,21451600-21451869,
21452071-21452368,21452455-21452921
Length = 549
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 691 DKSKVRTFGRHRTALQIAKHPASPSKHRWKYKCWRELFKRT 569
+K VRT G T LQI KHR +Y CW++L +T
Sbjct: 55 EKFAVRT-GLRYTRLQIKN---KWDKHRVEYNCWKKLTSQT 91
>12_02_0638 +
21439600-21439941,21440029-21440301,21440938-21441207,
21441409-21441706,21441793-21442259
Length = 549
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 691 DKSKVRTFGRHRTALQIAKHPASPSKHRWKYKCWRELFKRT 569
+K VRT G T LQI KHR +Y CW++L +T
Sbjct: 55 EKFAVRT-GLRYTRLQIKN---KWDKHRVEYNCWKKLTSQT 91
>12_02_0636 + 21433109-21433450,21433538-21434089
Length = 297
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 691 DKSKVRTFGRHRTALQIAKHPASPSKHRWKYKCWRELFKRT 569
+K VRT G T LQI KHR +Y CW++L +T
Sbjct: 55 EKFAVRT-GLRYTRLQIKN---KWDKHRVEYNCWKKLTSQT 91
>03_05_0028 -
19988940-19989477,19989631-19989673,19990956-19991037,
19991063-19991122
Length = 240
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 567 AVLLNSSLQHLYFQRCLLGDAGCLAICKAVRCLPNVLTLDLSGCELTMLGASYI 728
A ++ +SL L D C AI K + CL + LD+SG E + + ++ +
Sbjct: 131 ASIICNSLPRLKKLEIPNSDMSCAAIIKFLDCLEELEYLDISGYETSAISSAVL 184
>10_08_0029 + 14270945-14271364,14271449-14272486
Length = 485
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -2
Query: 561 IKDSNRGSSTAILLPAMKSIGSYWTRVGISLRRDY 457
+KDS GS+T+ +L A ++G + VG+ L R +
Sbjct: 450 LKDSECGSTTSSVLTAATTVGYCRSLVGLDLHRGH 484
>05_06_0263 + 26752759-26754393
Length = 544
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 558 LCEAVLLNSSLQHLYFQRCLLGDAGCLAICKAVRCLPNVLTLDLSGCELTMLGASYIAE 734
L E + L+ L+F + GD G + I + V+ PN+ + S + G +AE
Sbjct: 263 LSELIPSTEKLKILHFHNNMTGDEGAMFIAEMVKRSPNLESFRCSATRIGSDGGVALAE 321
>02_04_0036 + 19097693-19098106
Length = 137
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 208 SLQHLA*HCWNIRLLFGSTP 149
+ Q L HCW + LLFG P
Sbjct: 111 TFQQLGLHCWTLHLLFGFGP 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,668,060
Number of Sequences: 37544
Number of extensions: 398179
Number of successful extensions: 1157
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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