Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3m19
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077539-2|AAK84579.2|  427|Caenorhabditis elegans Hypothetical ...    31   0.66 
L23651-7|AAM22042.1|  926|Caenorhabditis elegans Associated with...    30   1.5  
L23651-6|AAK84496.3|  960|Caenorhabditis elegans Associated with...    30   1.5  
Z47812-4|CAA87791.1|  436|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81541-6|CAB04413.2|  326|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AL032653-3|CAA21713.1|  861|Caenorhabditis elegans Hypothetical ...    28   6.2  

>AF077539-2|AAK84579.2|  427|Caenorhabditis elegans Hypothetical
           protein T25D3.3 protein.
          Length = 427

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 181 WNIRLLFGSTPLPTMFKNHQKNIRSIFKNHSFSLRRAILKMYN 53
           W+ R L GSTP+  +      ++R +FKN S SL  ++   Y+
Sbjct: 56  WSERNLMGSTPIHVIDPPGLPSVRLVFKNESASLTGSLKHRYS 98


>L23651-7|AAM22042.1|  926|Caenorhabditis elegans Associated with
           ran (nuclear import/export) function protein 2, isoform
           b protein.
          Length = 926

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +3

Query: 549 LNPLCEAVLLNSSLQHLYFQRCLLGDAGCLAICKAVRCLPNVLTLDLSGCELTMLGASYI 728
           +  L  A+  N +L++L+ +   +   G  A+ K +   P +  L+LS C +   G +YI
Sbjct: 616 IRALVAALKHNRNLRYLWLEDNTVLPKGAKALAKTLESWPKLEVLNLSDCLIRDAGCNYI 675

Query: 729 AE 734
            +
Sbjct: 676 ID 677


>L23651-6|AAK84496.3|  960|Caenorhabditis elegans Associated with
           ran (nuclear import/export) function protein 2, isoform
           a protein.
          Length = 960

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +3

Query: 549 LNPLCEAVLLNSSLQHLYFQRCLLGDAGCLAICKAVRCLPNVLTLDLSGCELTMLGASYI 728
           +  L  A+  N +L++L+ +   +   G  A+ K +   P +  L+LS C +   G +YI
Sbjct: 653 IRALVAALKHNRNLRYLWLEDNTVLPKGAKALAKTLESWPKLEVLNLSDCLIRDAGCNYI 712

Query: 729 AE 734
            +
Sbjct: 713 ID 714


>Z47812-4|CAA87791.1|  436|Caenorhabditis elegans Hypothetical
           protein T05H10.4 protein.
          Length = 436

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 448 KLVKITARLFTVF-ASRSQSICSSTVFTGCLHRIEIECRLKSQLK 317
           K  +  A LF+V+ A R+        +  CLHR++ +CR + + K
Sbjct: 166 KFAEYEALLFSVYVAERTDRKYDGWTYFDCLHRLQSKCRYRVRAK 210


>Z81541-6|CAB04413.2|  326|Caenorhabditis elegans Hypothetical
           protein F48F5.4 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 504 IGSYWTRVGISLRRDYSA*NWLKSQLVCLQFLL 406
           +GSYW    + + + +S+ N  K  LV L+FL+
Sbjct: 204 VGSYWRYQAMKILKTHSSSNTSKGTLVLLRFLI 236


>AL032653-3|CAA21713.1|  861|Caenorhabditis elegans Hypothetical
           protein Y54E5B.2 protein.
          Length = 861

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 135 SKIIKKTFVRSSRITVSRFEERY*KCTINK 46
           SKI +K  +    IT ++F+E+Y KC  N+
Sbjct: 17  SKIAEKHLLSGKIITCAKFDEKYSKCAENQ 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,569,685
Number of Sequences: 27780
Number of extensions: 363258
Number of successful extensions: 995
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)