Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3m12
         (579 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   0.81 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   1.4  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    23   1.4  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   5.7  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    21   7.6  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   7.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 434 CGCRGGSPSVHQVLLFQTCEMCFCLLGSSVILP 336
           C C  G P+  +     TCE  F +  SS + P
Sbjct: 876 CKCENGKPTCWRECDKATCEKLFRMKKSSALRP 908


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 549 CEEAQRESTASTARSGTYQTSA 484
           C E+ R+     AR+GT+ T+A
Sbjct: 365 CSESNRKFYFKRARNGTFSTTA 386


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 329 RLRVKLPKTPIDKNTFHKFEITVPDELKDY 418
           +LR ++ K   D ++ HK  +T+ + L DY
Sbjct: 89  KLRREVEKAKRDLSSVHKTTLTIENLLADY 118


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 116 LILAASHFQRLLEPRCRARR*QWPYNKHH 30
           L LAASH Q+    + R     +PY   H
Sbjct: 49  LSLAASHLQQQQLKKQRLDNGDYPYENGH 77


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 269 FLVIEYLEWDNCYTEI 316
           F +I+Y  W  C+ E+
Sbjct: 231 FTLIDYSLWKACFVEV 246


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 290 EWDNCYTEIVPKDRLRVKLPKTPIDKNTFHKFEITVPDELKDYLHDIHSAKV-ENAHKEF 466
           ++D C   I P+++  +      +D+N   K +   P  L+  L    + K   N ++ F
Sbjct: 88  QYDTCQQGIYPENKTLINETSLQLDENKLDKKDDDSP-ALRALLTRPQAKKTPPNQYENF 146

Query: 467 QK 472
           Q+
Sbjct: 147 QQ 148


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,631
Number of Sequences: 336
Number of extensions: 2838
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)