Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3m12
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    29   0.65 
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   3.5  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    26   3.5  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    26   3.5  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   4.6  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    25   6.1  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    25   8.0  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   8.0  

>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = +2

Query: 380 KFEITVPDELKDYLHDIHSAKVEN 451
           +++  VP +++DY +D+HS  ++N
Sbjct: 317 EYDFLVPSKIQDYFYDVHSLLLKN 340


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 386 EITVPDELKDYLHDIHSAKVENAHKE 463
           E    D L++YLHD+     E+A KE
Sbjct: 698 EFLSSDTLREYLHDVFFLPPEHAQKE 723


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 391 YFKLVKCVFVYWGLR*FYPKTIF 323
           YF  ++C+   W L+ +YPKT++
Sbjct: 153 YFS-IECLLYLWALKIWYPKTLW 174


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2   DLSVEVYG--ENGAYYKAIVTDVLDNEVLVAFENDWQPESKF 121
           DLS+ ++G  +N  +Y+  +  ++        + DW PE +F
Sbjct: 109 DLSIFIHGLWKNTIFYEIPLLALVSESYFKFVDKDWSPEGQF 150


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 471 FWNSLCAFSTFALWMSW 421
           FW+ L     FA WMSW
Sbjct: 331 FWDGLWLNEGFATWMSW 347


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 272 LVIEYLEWDNCYTEIVPK 325
           L +EY +W+  + E++PK
Sbjct: 254 LWLEYRDWEKAFMEVIPK 271


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 65  LDNEVLVAFENDWQPESKFPFSQVFLPPKDT--GKHTEFTENQEVEVFARSN 214
           +D+E+ +  + + QP S FP  Q  L  K +   K +      +  +FA S+
Sbjct: 60  IDDEINLEIDEESQPISNFPVLQYILCDKSSLQEKQSRLKSGYKTVIFALSS 111


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 299 NCYTEIVPKDRLRVKL 346
           N YT+IVP D+ RV+L
Sbjct: 462 NRYTDIVPYDKTRVRL 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,897
Number of Sequences: 5004
Number of extensions: 47289
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)