Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3m12
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0205 - 21965782-21965979,21969169-21969417 29 2.0
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610... 28 4.7
09_02_0214 + 5846531-5846872,5847660-5847708,5847975-5848090,584... 28 6.2
07_03_1689 + 28710936-28711129,28711283-28711341,28711858-287118... 28 6.2
01_06_1696 + 39256171-39256393,39256513-39256595,39256692-392568... 28 6.2
11_01_0620 - 4964263-4965052,4965578-4965663,4966332-4966413,496... 27 8.2
06_01_0658 + 4772855-4772983,4773108-4773218,4773335-4773366,477... 27 8.2
03_06_0274 + 32797541-32797570,32797682-32797769,32798291-327984... 27 8.2
>03_05_0205 - 21965782-21965979,21969169-21969417
Length = 148
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 458 CARSPPSRCGCRGGSPSVHQVL 393
C R+PPS C G P+V++V+
Sbjct: 16 CRRAPPSAAACGGARPAVYRVV 37
>10_02_0167 -
6100676-6102111,6102174-6102708,6102967-6103975,
6104006-6105036
Length = 1336
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +2
Query: 104 QPESKFPFSQVFLPPKDTGKHTEFTENQEVEVFARSNEKEACGWWTANIKMMRGDFLVIE 283
+P+S +P S + + G T ++ + +V E+E C W M+ IE
Sbjct: 451 EPDSAYPDSDLHVSHIFGGSTTYSSKREYKKV-----EREVCSTWQGAAPKMKWSEQKIE 505
Query: 284 YLEWDNCYTEIVP 322
+ E D+ T ++P
Sbjct: 506 FSEEDHPKTSVIP 518
>09_02_0214 +
5846531-5846872,5847660-5847708,5847975-5848090,
5848169-5848282,5849050-5849100,5849746-5849834,
5849911-5849971,5850103-5850180,5850334-5850441,
5850832-5850957
Length = 377
Score = 27.9 bits (59), Expect = 6.2
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +2
Query: 365 KNTFHKFEITVPDELKDYLHDIHSAKVENAHKEFQKAIGAALVWYVPERAVLAVL-SRCA 541
+ TF+ F V +ELK ++HDI A + HK ++ YV +AVL +
Sbjct: 311 QTTFYPF-CGVNEELKAFVHDIVQANKDGDHKAEPRSS------YVEGARDVAVLEAMLE 363
Query: 542 SSQRRATMLQ 571
SS ++ TM+Q
Sbjct: 364 SSAKQGTMVQ 373
>07_03_1689 +
28710936-28711129,28711283-28711341,28711858-28711892,
28712123-28712226,28712325-28712397,28712495-28712553,
28712656-28712721,28712815-28712898,28712995-28713059,
28713152-28713342,28713522-28713612,28714076-28714134,
28714732-28714872,28715214-28715321
Length = 442
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = +2
Query: 278 IEYLEWDNCYT-EIVPKDR 331
++YL++DNCY I PKDR
Sbjct: 157 VDYLKYDNCYNLGIKPKDR 175
>01_06_1696 +
39256171-39256393,39256513-39256595,39256692-39256831,
39256882-39257398,39257518-39257565,39257832-39258006,
39258122-39258234,39258329-39258425,39258579-39258798,
39258985-39259144,39259233-39259646
Length = 729
Score = 27.9 bits (59), Expect = 6.2
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Frame = -1
Query: 534 RESTASTARSGTYQTSAAPIAFWNSLCAFSTFALWMSWR*SFSSSGTVISNL*NVF-LSI 358
+ AS + TY++ P+A +N+ + F MS + TV +++ V S+
Sbjct: 415 QNGVASPSILQTYESERRPVAIFNTELSVENFKAAMSIPAALGLDPTVANSVHQVINSSL 474
Query: 357 GVFGNFTLRRSL--GTISV*QLSHSRYSITRKSPL 259
G L++S+ G S+ + S Y + K+PL
Sbjct: 475 GSVIPRNLQKSVLEGLFSIGRAQVSDYILNEKNPL 509
>11_01_0620 -
4964263-4965052,4965578-4965663,4966332-4966413,
4967052-4967156,4967600-4967772,4967988-4968101,
4973939-4974037,4974320-4974398,4975424-4975492,
4975955-4976061
Length = 567
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 107 PESKFPFSQVFLPPKDTGKHTEFTENQEVEVFARSNEK 220
P+S+ P+ LPP + K FTE V+ + + K
Sbjct: 321 PKSERPYPSPLLPPPPSSKRPVFTEASSVDYLSGDSYK 358
>06_01_0658 +
4772855-4772983,4773108-4773218,4773335-4773366,
4773469-4773637,4773728-4773934,4774318-4774362
Length = 230
Score = 27.5 bits (58), Expect = 8.2
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Frame = +2
Query: 14 EVYGENGAYYKAIVTDVLDNEVLVAFENDWQPESKFPFSQVFLPPKDTGKHTEFTENQEV 193
E+ E G+ Y V +L + V F W FS+ +LP +D E+ E
Sbjct: 120 ELEEELGSDYPIFVKPMLQSHVTGGF---WLSLPTH-FSRKYLPKRDETIRLVDEEDDEF 175
Query: 194 EVFARSNEKEACGWW---TANIKMMRGDFLVIEYLE 292
+ +N++ G W + K++ GD LV + ++
Sbjct: 176 DTLYLANKRGLSGGWRGFSIAHKLVDGDCLVFQLIQ 211
>03_06_0274 +
32797541-32797570,32797682-32797769,32798291-32798401,
32798678-32798765,32798918-32799022,32799117-32799617,
32799749-32799884,32800023-32800216,32800306-32800414,
32800803-32800982
Length = 513
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1
Query: 171 SVCLPVSLGGKKT*ENGNF 115
SVC PVSLGG+ + +GNF
Sbjct: 245 SVCDPVSLGGRPSDFDGNF 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,452,129
Number of Sequences: 37544
Number of extensions: 321487
Number of successful extensions: 886
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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