Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3m11
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    25   3.8  
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    24   6.6  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    23   8.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    23   8.7  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    23   8.7  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    23   8.7  

>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 189 CKDLQDSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDNN 70
           CK  Q+S   +V+   G+GA+M      D+ ++ + +  N
Sbjct: 531 CKTFQNSISHIVSSFKGEGADMYADMLQDDVDLLKSIIEN 570


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 15  YS*SLLNLQVYKLKK*KMGYCPPV 86
           Y  SL  LQ+ KL + +MG  P V
Sbjct: 115 YQYSLTTLQIQKLSRKEMGLAPSV 138


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 189 CKDLQDSTVVLVARCSGKGAEMQV 118
           C+ +QD+ V++V   +G G   Q+
Sbjct: 106 CQQIQDNRVIVVVGETGSGKSTQI 129


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 78  PPVCSPPDCRPICGPASPLLCQSSVP 155
           PPV +PP   P   P+ P     S+P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLP 440


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 73  IVHQS-VHLRIVVRSVDLHLRSFARAACHQH 162
           I+H S VH+  +  S D+  + ++ +A H H
Sbjct: 63  IIHDSAVHIAPLPSSCDIDFKDYSTSAFHLH 93


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 132 LLCQSSVPPTQR 167
           LLCQ+S+ PTQR
Sbjct: 108 LLCQASLNPTQR 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,255,514
Number of Sequences: 5004
Number of extensions: 23387
Number of successful extensions: 64
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)