Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3m11
         (320 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   0.69 
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   1.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   1.2  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   2.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   6.4  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.4 bits (48), Expect = 0.69
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +3

Query: 72  YCPPVCSPPDCRPICGPASPLLCQSSVPPTQR--CYPVNPCI 191
           +CP V   P C  IC P    +C+      ++  C P + C+
Sbjct: 53  FCPNVVPKPLCIKICAPG--CVCRLGYLRNKKKVCVPRSKCL 92


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 72  YCPPVCSPPDCRPICGP 122
           +CP V   P C  IC P
Sbjct: 53  FCPNVVPKPLCIKICAP 69


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 111 SDDNPEVNRLVDNNPFFTFLIYRLVNLKDFTN 16
           SDDN  +  ++  N   +++I  +V   DF +
Sbjct: 408 SDDNIHIKGVISLNKLTSYVISGIVKCTDFVD 439


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +3

Query: 72  YCPPVCSPPDCRPICGPASPLL 137
           +C P C P    P     SPLL
Sbjct: 43  FCLPFCGPNVINPFFCDMSPLL 64


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 257 FLNSL*KSSIALH 219
           FLN L KSS+ +H
Sbjct: 425 FLNQLKKSSVLVH 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,429
Number of Sequences: 438
Number of extensions: 1770
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)