Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3m05
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    30   0.36 
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    30   0.36 
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    27   3.3  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 11/23 (47%), Positives = 19/23 (82%)
 Frame = +3

Query: 387 SPFNKFANTSSNPRKNTVINSPY 455
           SP + + + S++PRK+TVI+SP+
Sbjct: 129 SPTSSYGSGSASPRKSTVISSPF 151


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 303 TSNNYEKTTPTSTGIKSSLDEGGLKRILSPFNKFAN 410
           T N YE+ + TS     S     L+R L  +N+FAN
Sbjct: 333 TCNRYEEKSSTSARDSQSKSRASLERYLHYYNRFAN 368


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 459 CIGLSSKEKSYIISNCQ 509
           CIGL++K  SY++ NC+
Sbjct: 391 CIGLTAKSVSYLMYNCK 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,375
Number of Sequences: 5004
Number of extensions: 51071
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)