Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3m05
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0317 - 2128660-2128776,2129281-2129364,2129463-2129543,213...    29   2.6  
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403...    29   3.4  

>02_01_0317 -
           2128660-2128776,2129281-2129364,2129463-2129543,
           2130230-2130407,2130530-2130673,2130780-2130826,
           2131149-2131205,2131989-2132087,2132301-2132423,
           2132514-2132636,2132859-2132972,2133612-2133800,
           2134408-2134574,2134707-2134791,2134891-2135085,
           2135162-2135251,2135418-2135603,2135885-2135959,
           2136757-2136957
          Length = 784

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 539 KYCIKRYSESQNIFYLWPMQYYQKIIIA 622
           K C+  YSE +NIF +W +  Y++ ++A
Sbjct: 754 KNCMISYSEYRNIFPIWALGEYRRRVLA 781


>01_01_0548 -
           4033077-4033349,4034007-4034261,4034362-4034533,
           4034616-4034839,4035168-4035332,4035591-4035881,
           4035971-4036303,4036391-4036485,4036570-4036689,
           4036778-4036934,4037176-4037279,4037383-4037543,
           4037636-4037952,4038655-4038936,4039020-4039321,
           4039453-4039543,4040227-4040280,4040367-4040684,
           4041008-4041092,4041178-4041266,4041474-4041594,
           4042136-4042431
          Length = 1434

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 268 N*NAVITKLNVQHRIIMKKRHRLPLELKVL*TKADLN 378
           N  AV++K ++QHR   +K  +L LEL+     A LN
Sbjct: 796 NIQAVVSKDDIQHRAPRRKNGKLALELRSYLHSASLN 832


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,115,697
Number of Sequences: 37544
Number of extensions: 257587
Number of successful extensions: 553
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)