Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3m05
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   1.6  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   3.6  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   3.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   3.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   8.3  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 194 FVFTCSSFFY*SDFLRCKHVFKAVSKTLEPCTGIILILFYFT 69
           F+ +CS F Y +D    + +F A   T   C  +ILI++Y++
Sbjct: 193 FLTSCS-FDYLTDTNEIR-IFVATIFTFSYCIPMILIIYYYS 232


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 652 SGLIFSTQPLCNNNFL 605
           SGL+ +TQP+C+   L
Sbjct: 140 SGLVNNTQPMCSPKLL 155


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 99  WNHFNFILFYCFCYVSS 49
           W+HF ++    FC + S
Sbjct: 115 WSHFPYVFGEAFCIIQS 131


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 652 SGLIFSTQPLCNNNFL 605
           SGL+ +TQP+C+   L
Sbjct: 140 SGLVNNTQPMCSPKLL 155


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 652 SGLIFSTQPLCNNNFL 605
           SGL+ +TQP+C+   L
Sbjct: 140 SGLVNNTQPMCSPKLL 155


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -1

Query: 652 SGLIFSTQPLCN 617
           SGL+ +TQP+C+
Sbjct: 145 SGLVNNTQPMCS 156


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 488 LYYK*LPSKIYKVFEIEKY-CIKRYSESQNIFYLWPMQYY 604
           LY+   P  +     + +Y  ++++  S  IFY    QYY
Sbjct: 172 LYWDQEPIILADELHLTEYKLVEKWVNSSEIFYTTSQQYY 211


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -1

Query: 652 SGLIFSTQPLCN 617
           SG+I +TQP+C+
Sbjct: 144 SGIINNTQPMCS 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,333
Number of Sequences: 438
Number of extensions: 3058
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)