Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3m02
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    85   1e-17
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    30   0.36 
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    28   1.1  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    28   1.5  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    25   7.8  

>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 29/186 (15%)
 Frame = +2

Query: 188 WSLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYTGLKEVVTQHLETKVREDV 367
           W +L+ AI +I +K+ S LSFEELYRNAY +VLHK+GE+LY  +++V+   L+ +    +
Sbjct: 26  WEVLQRAIGDIFQKSTSQLSFEELYRNAYILVLHKYGEKLYNHVQDVIRSRLKEETVPAI 85

Query: 368 LHS-----LHNGFLQTLNN-----AWT------------------DHQTSMVMIRDILMY 463
             +     L N  L    N     +W+                  DH  SM MI  +L Y
Sbjct: 86  YKNYDASLLGNALLDIRKNDSYSTSWSRSLEAAHRFLSSLVNSWKDHIVSMQMISSVLKY 145

Query: 464 MDRVFVQQNEVDNVYNLGLIIFRDQVVRYGC-IRDHLRQTLLELVARERRGEVVDRLAIR 640
           +D+V+ +  +   V   G+ IFR+ V+     I +   +T+L LV  ER+G  ++R  I 
Sbjct: 146 LDKVYSKSADKVPVNENGIYIFREVVLLNSFEIGEKCVETILILVYLERKGNTINRPLIN 205

Query: 641 NACQML 658
           +   ML
Sbjct: 206 DCLDML 211


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -3

Query: 571 KMISNASITNNLISEDNEPKIVDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIVE 401
           +  S +  +  L SEDN+P I ++V  I   +N V     I++ DH    +S CI++
Sbjct: 26  RFFSVSYASRKLASEDNKPSIQEVVRGI--PQNRVRNWAVIAHIDHGKSTLSDCILK 80


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 83  IKMIRKFKVW--NFSEPYYQMYPDTWMTMDEKYVERIWSLLKNAIQEIQKKNNSGLSFEE 256
           + + R+F  W    S+       D+ +T+DE  +++  ++    ++++    NS +SF +
Sbjct: 286 LSLNRRFYAWLMGLSKDTELSISDSSITVDENTLQQNMAIFFEGVKDLLSSKNSLMSFYK 345

Query: 257 LYRNAYTM 280
            +R  Y +
Sbjct: 346 AFRILYAL 353


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -3

Query: 574 TKMISNASITNNLISEDNEPKIVDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIVESL 395
           T   S     N +   DN+P +   V F  + K + H++Q  S   H+ L+  P ++   
Sbjct: 635 TVFASETENENTVFIRDNKPTMYTPVYFAEVGKVNCHVYQLSSLPVHS-LITGPAVIVDT 693

Query: 394 *ETIV 380
            +T++
Sbjct: 694 TQTLL 698


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 222 CISCMAFFNKLHIRSTYF 169
           C+ C A   +LHI++ YF
Sbjct: 274 CLMCAAALKQLHIKAVYF 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,969
Number of Sequences: 5004
Number of extensions: 67060
Number of successful extensions: 185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)