Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3l24
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...   308   4e-85
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    26   5.6  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    25   9.9  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    25   9.9  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    25   9.9  

>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score =  308 bits (757), Expect = 4e-85
 Identities = 130/186 (69%), Positives = 157/186 (84%)
 Frame = +3

Query: 111 NEIRKTFIDFFIKKGHKYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGSVDPNSDMAQYI 290
           NEIR+TF+ +F   GH  V SSS IP DDPTLLFANAGMNQFKPIFLG+VDP+SD A+  
Sbjct: 13  NEIRRTFLKYFEDHGHTIVPSSSVIPYDDPTLLFANAGMNQFKPIFLGTVDPSSDFAKLK 72

Query: 291 RVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWELLTDVFK 470
           R  ++QKCIRAGGKHNDL+DVGKD YHHT FEM+GNWSFGDYFKKE  A AW+LLT+V+ 
Sbjct: 73  RACDSQKCIRAGGKHNDLEDVGKDNYHHTMFEMLGNWSFGDYFKKEAIAMAWDLLTNVYG 132

Query: 471 LSRERLYVTYFGGDPSSGLEPDLECKNIWLNLGVPEAHILPGSMKDNFWEMGETGPCGPC 650
           L +++LYVTYFGG   SGLEPDLE + +WL++G+ E+ ++PGS+KDNFWEMG+ GPCGPC
Sbjct: 133 LKKDQLYVTYFGGHEESGLEPDLEARQLWLDIGIDESRVIPGSLKDNFWEMGDQGPCGPC 192

Query: 651 SELHYD 668
           SE+HYD
Sbjct: 193 SEIHYD 198


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = +3

Query: 174 SSTIPLDDPTLLFANAGMNQFKPIFLGS-VDPNSDMAQYIRVV---NTQKCIRAGGKHND 341
           S + PL+D      NA + +FK     + V P  ++ +  ++    NT+ CI  GGK  +
Sbjct: 49  SKSEPLEDK----GNAEVKEFKETTKSNGVKPEVEITESTKIQKESNTEPCISTGGKVEE 104

Query: 342 LD-DVGKDV 365
            +  V KDV
Sbjct: 105 KELKVNKDV 113


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +3

Query: 411 DYFKKEICAWAWELLTDVFKLSRERLYVTYFG 506
           +YF   I AWAW  L   F       YV YFG
Sbjct: 356 NYFGDWIMAWAW-CLPAGFGSPIPYFYVAYFG 386


>SPCC1739.06c |||uroporphyrin methyltransferase
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 70 STKNAYRK*KVCIAANSLQI 11
          S KNAYR+  +C++ NS +I
Sbjct: 17 SGKNAYRRVNLCLSENSSKI 36


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 648 TGHKDLFHPFPKNYPSCFQAKCV 580
           T   DLF  F   YPSC  AK +
Sbjct: 193 TEDSDLFMTFRSIYPSCTSAKII 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,101,969
Number of Sequences: 5004
Number of extensions: 72182
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)