Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3l24
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0097 + 5283306-5283683,5284618-5284758,5284928-5285074,528...   285   2e-77
06_01_0977 + 7585817-7585970,7586057-7586146,7586500-7586702,758...   175   3e-44
07_01_1034 - 8962703-8962748,8962831-8962991,8963068-8963905,896...   159   2e-39
05_06_0264 + 26756337-26756411,26756494-26756594,26757196-267573...    29   4.4  
08_02_0258 + 14968858-14970648                                         28   5.9  
08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476...    28   7.7  

>10_02_0097 +
           5283306-5283683,5284618-5284758,5284928-5285074,
           5285226-5285378,5285509-5285644,5285740-5285840
          Length = 351

 Score =  285 bits (700), Expect = 2e-77
 Identities = 122/191 (63%), Positives = 146/191 (76%)
 Frame = +3

Query: 96  TSMTGNEIRKTFIDFFIKKGHKYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGSVDPNSD 275
           T    + +R+TFI FF  K H    SS  +P+DDPTLLFANAGMNQFKP+FLG+  P++ 
Sbjct: 5   TEWPASRVRETFISFFESKSHTRWPSSPVVPVDDPTLLFANAGMNQFKPVFLGTAAPDAP 64

Query: 276 MAQYIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWELL 455
           + +  R  NTQKCIRAGGKHNDLDDVGKD YHHTFFEM+GNWSFGDYFK+E   +AWELL
Sbjct: 65  LGRLRRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGFAWELL 124

Query: 456 TDVFKLSRERLYVTYFGGDPSSGLEPDLECKNIWLNLGVPEAHILPGSMKDNFWEMGETG 635
           T V+KL  +R+Y TYFGGD   GL PD E KNIWL   +P+  +LP   KDNFWEMG+TG
Sbjct: 125 TQVYKLPTDRIYATYFGGDEKFGLAPDTESKNIWLKY-LPKEKVLPFGCKDNFWEMGDTG 183

Query: 636 PCGPCSELHYD 668
           PCGPC+E+H+D
Sbjct: 184 PCGPCTEIHFD 194


>06_01_0977 +
           7585817-7585970,7586057-7586146,7586500-7586702,
           7587274-7587452,7587913-7587991,7588403-7588537,
           7588651-7588800,7588887-7588997,7589084-7590004,
           7590351-7590623,7590853-7591062,7591425-7591573,
           7591716-7592052
          Length = 996

 Score =  175 bits (426), Expect = 3e-44
 Identities = 92/189 (48%), Positives = 117/189 (61%), Gaps = 1/189 (0%)
 Frame = +3

Query: 105 TGNEIRKTFIDFFIKKGHKYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGSVDPNSDMAQ 284
           +G+ IR+ F+DF+  +GHK + SSS +P DDPT+    AGM QFKPIFLG        A 
Sbjct: 100 SGDAIRRRFLDFYAARGHKILPSSSLVP-DDPTVFLTIAGMLQFKPIFLGKEPRRVPCA- 157

Query: 285 YIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWELLTDV 464
                 +QKCIR     ND+++VG+   H TFFEM+GN+SFGDYFKKE   WAWEL T  
Sbjct: 158 ----TTSQKCIRT----NDIENVGRTSRHQTFFEMLGNFSFGDYFKKEAITWAWELTTKE 209

Query: 465 FKLSRERLYVTYFGGDPSSGLEPDLECKNIWLN-LGVPEAHILPGSMKDNFWEMGETGPC 641
           F L  ERL+++ F        + D E  +IW N +GVP+  I      DNFW  G TGPC
Sbjct: 210 FGLPPERLWISVF--------QDDDEAFSIWHNEVGVPKERIKRLGEDDNFWTSGATGPC 261

Query: 642 GPCSELHYD 668
           GPCSE++YD
Sbjct: 262 GPCSEIYYD 270


>07_01_1034 -
           8962703-8962748,8962831-8962991,8963068-8963905,
           8963991-8964128,8964206-8964355,8964436-8964683,
           8964825-8964953,8965735-8965960,8966909-8966975,
           8967488-8967551,8968902-8969000,8969074-8969157,
           8969240-8969321,8969412-8969460,8969664-8969769,
           8970650-8970734,8970814-8970917,8970994-8971109,
           8971187-8971373,8972005-8972113,8972633-8972761,
           8973365-8973449,8973812-8973947,8974078-8974230,
           8974488-8974634,8974801-8974941,8975580-8975903
          Length = 1400

 Score =  159 bits (386), Expect = 2e-39
 Identities = 79/176 (44%), Positives = 106/176 (60%)
 Frame = +3

Query: 141 FIKKGHKYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGSVDPNSDMAQYIRVVNTQKCIR 320
           F  K H     S+ +   D  LLFA+A MNQF P+ L +    S +        + +CI 
Sbjct: 12  FESKAHTRCSPSTILAAKDSPLLFADAEMNQFMPVLLDTAAQGSQLGCPGHACKSLRCI- 70

Query: 321 AGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWELLTDVFKLSRERLYVTY 500
                     V  D  H TF E++GNWSFGDYFK+E   +AWELLT V++L  +R++VTY
Sbjct: 71  ---------PVAVDDRHLTFTEVLGNWSFGDYFKEEAIGFAWELLTKVYELEVDRIFVTY 121

Query: 501 FGGDPSSGLEPDLECKNIWLNLGVPEAHILPGSMKDNFWEMGETGPCGPCSELHYD 668
           FGGD  SGL PDLE K+IWL   +P   +LP   K NF++ G+TGPCGPCS++++D
Sbjct: 122 FGGDEKSGLAPDLESKHIWLKY-LPSDKVLPLVNKGNFYQNGDTGPCGPCSQIYFD 176


>05_06_0264 +
           26756337-26756411,26756494-26756594,26757196-26757369,
           26757449-26757548,26757869-26758006,26758104-26758185,
           26758631-26758680,26758748-26758873
          Length = 281

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 644 ATRTCFTHFPKIILHASRQNV 582
           A R CFTH P  IL +SR N+
Sbjct: 71  ADRVCFTHHPSSILCSSRYNL 91


>08_02_0258 + 14968858-14970648
          Length = 596

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -2

Query: 652 EHGPQGPVSPISQKL-SFMLPGKMCASGTPKFNQMFLHSRSGSRPDEGSPPKYVTYNLSL 476
           +H P  P   +  KL ++    + CA GTP +N+     RSG R   G    YV + L  
Sbjct: 129 KHFPYAPSPHLLDKLRAYEARHRRCAPGTPLYNRSVEQLRSG-RSAGGVECNYVVW-LPF 186

Query: 475 DNL 467
           D L
Sbjct: 187 DGL 189


>08_02_0733 + 20546072-20546325,20546924-20547017,20547441-20547624,
            20547722-20547831,20548328-20548423,20548525-20548679,
            20548743-20548986,20549159-20549314,20549600-20549829,
            20552213-20552316,20552420-20552505,20552776-20553066,
            20553383-20553475,20553640-20553735,20553838-20553939,
            20554196-20554266,20554784-20555035,20555786-20556529,
            20557038-20557119,20557192-20557347,20557446-20557655,
            20558282-20558665
          Length = 1397

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 658  SSEHGPQGPVSPISQK 611
            SSEHGP+GP   +SQ+
Sbjct: 1316 SSEHGPEGPSQDVSQQ 1331


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,769,947
Number of Sequences: 37544
Number of extensions: 412770
Number of successful extensions: 878
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)