Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3l22
(717 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 237 4e-63
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 121 4e-28
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 121 4e-28
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 105 4e-23
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 99 4e-21
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 95 6e-20
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 95 6e-20
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 91 7e-19
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 89 3e-18
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 87 9e-18
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 85 4e-17
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 80 1e-15
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 71 6e-13
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 71 6e-13
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 71 6e-13
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 71 8e-13
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 69 4e-12
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 65 5e-11
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 62 5e-10
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 61 7e-10
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 57 1e-08
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 45 5e-05
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 39 0.003
Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 37 0.017
AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf (tbp-asso... 33 0.27
Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical pr... 32 0.47
AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical ... 32 0.47
AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical ... 32 0.47
U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z79754-7|CAB02096.2| 387|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 29 4.4
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 29 4.4
AF537093-1|AAO85552.1| 387|Caenorhabditis elegans ubiquitin con... 28 7.7
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 237 bits (581), Expect = 4e-63
Identities = 95/152 (62%), Positives = 131/152 (86%)
Frame = +3
Query: 102 MAATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPDNPPYNKGAFRIEINFPAE 281
M+ATRRLQKEL D++ G+K++ +++ +E+N+L W L++PD PYNKGAF++ I FP +
Sbjct: 1 MSATRRLQKELGDLKNCGVKAYENVECEETNLLKWTVLLIPDKEPYNKGAFKVGITFPVD 60
Query: 282 YPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHP 461
YPFKPPK++F+TKIYHPN+DE+G+ CLPI++AENWKPATKT+QV+ AL++L+N+PEP HP
Sbjct: 61 YPFKPPKVAFETKIYHPNVDEEGKFCLPIVTAENWKPATKTEQVMMALLSLINEPEPSHP 120
Query: 462 LRAELAEEFLKDRKKFTKNAEEFTKKHSEKRP 557
+RA++AEEF KD KKF K AEE T+KH+EKRP
Sbjct: 121 IRADVAEEFQKDHKKFMKTAEEHTRKHAEKRP 152
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 121 bits (292), Expect = 4e-28
Identities = 56/147 (38%), Positives = 92/147 (62%), Gaps = 1/147 (0%)
Frame = +3
Query: 108 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 284
A +R+QKEL D+ + V + ++ WQ I+ P PY G F + I+FP +Y
Sbjct: 2 ALKRIQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60
Query: 285 PFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPL 464
PFKPPK++F T+IYHPNI+ G +CL I+ ++ W PA +V+ ++ +L+ DP P+ PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 465 RAELAEEFLKDRKKFTKNAEEFTKKHS 545
E+A + DR+++ + A E+T+K++
Sbjct: 120 VPEIARIYKTDRERYNQLAREWTQKYA 146
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 121 bits (292), Expect = 4e-28
Identities = 56/147 (38%), Positives = 92/147 (62%), Gaps = 1/147 (0%)
Frame = +3
Query: 108 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 284
A +R+QKEL D+ + V + ++ WQ I+ P PY G F + I+FP +Y
Sbjct: 2 ALKRIQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60
Query: 285 PFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPL 464
PFKPPK++F T+IYHPNI+ G +CL I+ ++ W PA +V+ ++ +L+ DP P+ PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 465 RAELAEEFLKDRKKFTKNAEEFTKKHS 545
E+A + DR+++ + A E+T+K++
Sbjct: 120 VPEIARIYKTDRERYNQLAREWTQKYA 146
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 105 bits (251), Expect = 4e-23
Identities = 47/123 (38%), Positives = 78/123 (63%), Gaps = 1/123 (0%)
Frame = +3
Query: 183 DESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVC 359
DESN + +I PD+ P+ G F++E+ P EYP PK+ F TKIYHPNID+ G++C
Sbjct: 29 DESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYPMAAPKVRFMTKIYHPNIDKLGRIC 88
Query: 360 LPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKK 539
L I+ + W PA + V+ ++ AL++ P PE PL ++AE++ + + K A+++T
Sbjct: 89 LDILK-DKWSPALQIRTVLLSIQALLSAPNPEDPLATDVAEQWKTNEAEAIKTAKQWTMN 147
Query: 540 HSE 548
+++
Sbjct: 148 YAQ 150
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 98.7 bits (235), Expect = 4e-21
Identities = 44/142 (30%), Positives = 80/142 (56%), Gaps = 1/142 (0%)
Frame = +3
Query: 117 RLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPDNPPYNKGAFRIEINFPAEYPFKP 296
R++KE+ D+ ++ + +D + E +Q I+ D Y F + ++ EYPFKP
Sbjct: 17 RIRKEIADLAKNKRRFIKDFRKIEKCKDIFQFKIIGDGVLYKNMIFTLTLDVNVEYPFKP 76
Query: 297 PKISFKTKIYHPNIDEKG-QVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAE 473
P + F +YHPN+D ++C P++ ENWKP T + V+ L+ L+N+P+ P+ +
Sbjct: 77 PYLKFCHNVYHPNVDPVTCELCSPMLLQENWKPETTMEDVLLNLIVLLNEPDLSRPVNID 136
Query: 474 LAEEFLKDRKKFTKNAEEFTKK 539
A +++ ++ +F K + E KK
Sbjct: 137 AAHDYIHNKVEFVKKSTELAKK 158
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 94.7 bits (225), Expect = 6e-20
Identities = 40/148 (27%), Positives = 79/148 (53%), Gaps = 1/148 (0%)
Frame = +3
Query: 99 TMAATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFP 275
T + RRL ++ +++ E NILTW+ +I P P+ G F++ + F
Sbjct: 2 TTPSRRRLMRDFKKLQEDPPAGVSGAPT-EDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 276 AEYPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPE 455
EYP KPP + F +K++HPN+ G +CL I+ W P ++ ++ +L+++P P
Sbjct: 61 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQ-NRWSPTYDVAAILTSIQSLLDEPNPN 119
Query: 456 HPLRAELAEEFLKDRKKFTKNAEEFTKK 539
P + A+ + ++R+++ K ++ ++
Sbjct: 120 SPANSLAAQLYQENRREYEKRVQQIVEQ 147
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 94.7 bits (225), Expect = 6e-20
Identities = 40/148 (27%), Positives = 79/148 (53%), Gaps = 1/148 (0%)
Frame = +3
Query: 99 TMAATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFP 275
T + RRL ++ +++ E NILTW+ +I P P+ G F++ + F
Sbjct: 2 TTPSRRRLMRDFKKLQEDPPAGVSGAPT-EDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 276 AEYPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPE 455
EYP KPP + F +K++HPN+ G +CL I+ W P ++ ++ +L+++P P
Sbjct: 61 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQ-NRWSPTYDVAAILTSIQSLLDEPNPN 119
Query: 456 HPLRAELAEEFLKDRKKFTKNAEEFTKK 539
P + A+ + ++R+++ K ++ ++
Sbjct: 120 SPANSLAAQLYQENRREYEKRVQQIVEQ 147
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 91.1 bits (216), Expect = 7e-19
Identities = 45/157 (28%), Positives = 87/157 (55%), Gaps = 13/157 (8%)
Frame = +3
Query: 120 LQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYPFKP 296
L+K+L D+R+ + F VD+++I W+ L++ P + Y G F+ ++FP +YP KP
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 297 PKISFKTKIYHPNIDEKGQVCLPII------------SAENWKPATKTDQVIQALVALVN 440
PK+ F ++I+HPNID++G VC+ I+ E W P + ++ ++++++
Sbjct: 68 PKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLT 127
Query: 441 DPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKKHSEK 551
DP E P + A+ ++ +F K + ++ E+
Sbjct: 128 DPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQEE 164
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 89.0 bits (211), Expect = 3e-18
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 13/157 (8%)
Frame = +3
Query: 108 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 284
A +RL E ++ + +DE N W+ LI P+ + G F I FP +Y
Sbjct: 5 ALKRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITFPQDY 64
Query: 285 PFKPPKISFKTKIYHPNIDEKGQVCLPIISA------------ENWKPATKTDQVIQALV 428
P PPK+ F I+HPNI G+VC+ I+ A E W P ++++ ++V
Sbjct: 65 PLSPPKMRFTCGIFHPNIYADGRVCISILHAPGDDPTGYELSNERWSPVQSIEKILLSVV 124
Query: 429 ALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKK 539
+++ +P E P A+ + +DR +F K A+ +K
Sbjct: 125 SMLAEPNDESPANVSAAKMWREDRAQFEKIADSLVRK 161
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 87.4 bits (207), Expect = 9e-18
Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 4/151 (2%)
Frame = +3
Query: 108 ATRRLQKELNDIRQSGLKSFRDIQVD--ESNILTWQGLIV-PDNPPYNKGAFRIEINFPA 278
A RLQ+E ++ + S I ++ N+ +G I P + PY G F ++I P
Sbjct: 5 AFNRLQRECKEVVTNSEISETGIMIEILNENLTEIKGHIRGPPDTPYAGGMFDLDIKIPD 64
Query: 279 EYPFKPPKISFKTKIYHPNI-DEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPE 455
+YPF PP + F TKI+HPN+ + G +CL I+ + W + V+ ++ AL+ PEP+
Sbjct: 65 QYPFSPPNVKFSTKIWHPNVSSQTGVICLDILK-DQWAASLTLRTVLLSIQALMCTPEPK 123
Query: 456 HPLRAELAEEFLKDRKKFTKNAEEFTKKHSE 548
P A +A+++++ F AE +T K ++
Sbjct: 124 DPQDAVVAKQYMEKPAVFKATAEYWTTKFAK 154
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 85.4 bits (202), Expect = 4e-17
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 13/142 (9%)
Frame = +3
Query: 108 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQ-GLIVPDNPPYNKGAFRIEINFPAEY 284
A R L EL +++ ++ F I V+E N+ W G+ P Y G F+ I FP+ Y
Sbjct: 11 ALRALTMELKNLQSQPVEGFT-IDVNEDNLFVWTVGIYGPPKTLYQGGYFKASIRFPSNY 69
Query: 285 PFKPPKISFKTKIYHPNIDEKGQVCLPI------------ISAENWKPATKTDQVIQALV 428
P+ PP + F TK++HPN+ E G +C+ I ++ E W P ++ +++
Sbjct: 70 PYSPPSMKFTTKVWHPNVYENGDLCISILHSPIDDPQSGELACERWNPTQSVRTILLSVI 129
Query: 429 ALVNDPEPEHPLRAELAEEFLK 494
+L+N+P P + + + K
Sbjct: 130 SLLNEPNTSSPANVDASVMYRK 151
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 80.2 bits (189), Expect = 1e-15
Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 19/168 (11%)
Frame = +3
Query: 87 SKFCTMAATRRLQKELN--DIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFR 257
S TR+ ++ N DI ++G+ +++ E+N++ +G I P+ PY G F
Sbjct: 16 SNLALARVTRKCKEVANASDITEAGIH----VEIKENNLMDIKGFIKGPEGTPYAGGTFE 71
Query: 258 IEINFPAEYPFKPPKIS---------------FKTKIYHPNI-DEKGQVCLPIISAENWK 389
I+++ P YPF+PPK++ F T+I+HPNI + G +CL I+ + W
Sbjct: 72 IKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILK-DKWT 130
Query: 390 PATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFT 533
+ V+ +L A++ PEP P A +A++F+ + FT A +T
Sbjct: 131 ASLTLRTVLLSLQAMLCSPEPSDPQDAVVAKQFINNYPMFTATAVYWT 178
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 71.3 bits (167), Expect = 6e-13
Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Frame = +3
Query: 192 NILTWQGLIVPDNPP-YNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPI 368
N+ W+ I + G +RI + F ++P PPK F+ ++HPN+ G VCL +
Sbjct: 37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSL 96
Query: 369 ISA-ENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKKHS 545
+ ++WKP+ Q++ + L+N P E P +AE + + ++R ++ K ++ K++
Sbjct: 97 LDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKKEAVKYA 156
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 71.3 bits (167), Expect = 6e-13
Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Frame = +3
Query: 192 NILTWQGLIVPDNPP-YNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPI 368
N+ W+ I + G +RI + F ++P PPK F+ ++HPN+ G VCL +
Sbjct: 37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSL 96
Query: 369 ISA-ENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKKHS 545
+ ++WKP+ Q++ + L+N P E P +AE + + ++R ++ K ++ K++
Sbjct: 97 LDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKKEAVKYA 156
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 71.3 bits (167), Expect = 6e-13
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Frame = +3
Query: 222 PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDE-KGQVCLPIISAENWKPAT 398
P + Y G +RI ++ P +YPFK P I F KI+HPNIDE G VCL +I+ + W
Sbjct: 42 PKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVIN-QAWTALY 100
Query: 399 KTDQVIQA-LVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKKHSEK 551
+ L L+ P PL E A ++ +++ + E+ + + +
Sbjct: 101 DLTNIFDTFLPQLLTYPNAADPLNGEAARLYIHKPEEYRRTCREYVMRFASE 152
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 70.9 bits (166), Expect = 8e-13
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Frame = +3
Query: 216 IVPDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPIISAEN---- 383
+ P Y G FR +I P EY PP + TK++HPNI+E G +CL I+ +
Sbjct: 65 VTPQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQY 124
Query: 384 -WKPATKTDQVIQALVALVND-PEPEHPLRAELAEEFLKDRKKFTKNAEEFTKKH 542
W+P V+ LV+L ND + L + A+ + ++R+ F E+ ++
Sbjct: 125 GWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESFNHRVREYISRY 179
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 68.5 bits (160), Expect = 4e-12
Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Frame = +3
Query: 207 QGLIVP-DNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDE-KGQVCLPIISAE 380
QG+I + PY G F ++I YPFK P + F TKI+HP++ G +CL +
Sbjct: 382 QGIIKGVEETPYEGGIFELDIKIGESYPFKAPTVKFITKIWHPSVSPFDGTICLHDVDNG 441
Query: 381 NWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKKHSEKR 554
W + +V+ + + +++ + P+ E+ E+ +R+ F K AE +TK+ + R
Sbjct: 442 VWPVSMTIYKVLIVIQSWMSNFNEKEPIDVEILEQATNNREVFEKTAEFWTKRFAGSR 499
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 64.9 bits (151), Expect = 5e-11
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Frame = +3
Query: 105 AATRRLQKELNDIRQSGLKSFRDIQVDESNILT-WQ-GLIVPDNPPYNKGAFRIEINFPA 278
AATRRL KEL ++ + SN L W+ G++ + Y F ++ F
Sbjct: 4 AATRRLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFTFGP 63
Query: 279 EYPFKPPKISF--KTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALV-NDPE 449
+YPF P++ F +T HP+I G +CL I+S ++W PA V ++++++ + E
Sbjct: 64 QYPFNSPEVMFVGETIPAHPHIYSNGHICLSILS-DDWTPALSVQSVCLSILSMLSSSKE 122
Query: 450 PEHPL 464
+HP+
Sbjct: 123 KKHPI 127
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 61.7 bits (143), Expect = 5e-10
Identities = 39/173 (22%), Positives = 82/173 (47%), Gaps = 6/173 (3%)
Frame = +3
Query: 30 QLIDLNFKKE----YLWNILGHFSKFCTMAATRRLQKELNDIRQSGLKSFRDIQVDESNI 197
Q +DL++ +E L+++ + +F T + +K D R + + I + ++I
Sbjct: 8 QYVDLSYFRETADALLFDVETNSREFTNEINTVKEEKAKWDERTPQGYTAKPISFEGADI 67
Query: 198 -LTWQGLIV-PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPII 371
+W + P P+ G + + +NF ++P PP FKT ++HPN+D +G + L ++
Sbjct: 68 WCSWICTVPGPRGSPWEGGEYEVSVNFH-KWPIIPPICEFKTPLHHPNVDLRGSIYLKML 126
Query: 372 SAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEF 530
E+W T ++++ + L+ P+ E E+ R+ + A +
Sbjct: 127 EQEHWSSETSLKKLLREISNLLATPDLTQAANIEAWMEYENQRENYEAKARAY 179
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 61.3 bits (142), Expect = 7e-10
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Frame = +3
Query: 111 TRRLQKELNDIRQS-GLKSFRDIQV--DESNILTWQGLIV-PDNPPYNKGAFRIEINFPA 278
T+R+ KEL I + L + I V DE + + LI PD+ PY G F +I FP
Sbjct: 411 TKRIAKELASIANALPLNASNSIYVCYDEGRVDIIKVLISGPDDTPYANGLFEFDIFFPT 470
Query: 279 EYPFKPPKISFKTK-----IYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVND 443
YPF PPK +F T ++PN+ G++CL I+ +P K + + LV+
Sbjct: 471 GYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPEEKWNPYCSLMQVLVSI 530
Query: 444 PE 449
E
Sbjct: 531 QE 532
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 57.2 bits (132), Expect = 1e-08
Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Frame = +3
Query: 108 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 284
A +RL+K+ + + + + + E+NIL W+ +I+ PY G + ++ FP ++
Sbjct: 9 ALQRLKKDYQRLLKEPVPFMKAAPL-ETNILEWRYIIIGAPKTPYEGGIYMGKLLFPKDF 67
Query: 285 PFKPPKISFKTKIYHPNIDEKGQVCLPI--ISAENWKPATKTDQVIQALVALVNDPEPEH 458
PFKPP I T + ++CL I + W PA +I L++ +ND +P
Sbjct: 68 PFKPPAILMLTP--NGRFQTNTRLCLSISDYHPDTWNPAWTVSTIITGLMSFMNDNQP-- 123
Query: 459 PLRAELAEEFLKDRKKFTKNAEEFTKK 539
L + + E +RK K ++++ K
Sbjct: 124 TLGSLVTSE--SERKLLAKKSKQWNLK 148
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 45.2 bits (102), Expect = 5e-05
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Frame = +3
Query: 105 AATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPD-NPPYNKGAFRIEINFPAE 281
A RRL KE ++RQ Q E N+ W I + G + I FPA+
Sbjct: 10 AGVRRLMKEAMELRQP--TEMYHAQPMEDNLFEWHFTIRGTLGTDFEGGIYHGRIIFPAD 67
Query: 282 YPFKPPKISFKTKIYHPNIDEKGQVCLPI--ISAENWKPATKTDQVIQALVALV 437
YP KPP + T +++K VCL I E W P+ + AL+ +
Sbjct: 68 YPMKPPNLILLTPNGRFELNKK--VCLSISGYHPETWLPSWSIRTALLALIGFL 119
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 222 PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNID-EKGQV 356
P + PY G F +++ FP YP P+I F+T I++ ++ GQV
Sbjct: 38 PADTPYETGVFEVDLTFPDNYPNALPQIKFQTLIWNCAVEPSTGQV 83
>Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical
protein Y69H2.6 protein.
Length = 292
Score = 37.9 bits (84), Expect = 0.007
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Frame = +3
Query: 189 SNILTWQGLIVPDNPPYNKGAFRIEINFPAEYPFKP--PKISF-KTKIYHPNIDEKG-QV 356
+N W G+I + G FR I+ P E+P P++ F ++ ++HP I K ++
Sbjct: 46 NNKFLWFGVIFVRKGIFGGGIFRFNIHIPLEFPDASDLPRVIFEQSNLFHPLICTKSKEL 105
Query: 357 CLPIISAENWKPATKTDQVIQALVALVN-----DPEPEHPLRAELAEEFLKDRKKFTKNA 521
CL E WK + + + LV L D + + + E + + + R KF + A
Sbjct: 106 CLNRSFPEGWK--KEKHSLRRVLVVLQRSFYSYDVDTDKCINPEASVLYKEHRDKFREIA 163
Query: 522 EE 527
+E
Sbjct: 164 KE 165
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 36.7 bits (81), Expect = 0.017
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = +3
Query: 174 IQVDESNILT-WQGLIV-PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEK 347
++ D LT W I+ P PY + ++I YP +PP + F TK++ +++
Sbjct: 30 LEDDSDMTLTRWTASIIGPPRTPYESRIYNLQIQCGGNYPREPPTVRFTTKVHMVGVNQS 89
Query: 348 GQVC--LPIISAENWKPATKTDQVIQ 419
V + + NW + V++
Sbjct: 90 NGVIDKRNLTTLRNWSNSYMIKTVLE 115
>AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 4
protein.
Length = 523
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +3
Query: 372 SAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTK 536
+A + K TK + ++ L+ L N+ +PE P +A +E ++ AEEFT+
Sbjct: 97 AASDDKNVTKCVRFLKTLINLSNNDDPEMPDKAARVKELIRGVIYLETTAEEFTR 151
>Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical
protein F26H9.7 protein.
Length = 219
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +3
Query: 174 IQVDESNILTWQGLIV-PDNPPYNKGAFRIEINF-PAEYPFKPPKISFKTKIYHPNIDEK 347
+++DE+ L + +I P Y G F +IN P + P++ F T I+HPN+ +
Sbjct: 54 MRIDETKQLLFHVIIDGPVGSIYEGGTFFADINIQPYQNHSLIPRVCFHTFIFHPNLGKY 113
Query: 348 G 350
G
Sbjct: 114 G 114
>AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical
protein C02E11.1b protein.
Length = 1123
Score = 31.9 bits (69), Expect = 0.47
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 231 PPYNKGAFRIEINFPAEYPFKPPKISFK 314
P YNKG + ++++ PA Y F+P I K
Sbjct: 67 PVYNKGHYTLKVSAPAGYYFEPDSIEIK 94
>AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical
protein C02E11.1a protein.
Length = 1121
Score = 31.9 bits (69), Expect = 0.47
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 231 PPYNKGAFRIEINFPAEYPFKPPKISFK 314
P YNKG + ++++ PA Y F+P I K
Sbjct: 65 PVYNKGHYTLKVSAPAGYYFEPDSIEIK 92
>U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical
protein F20D6.8 protein.
Length = 370
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 435 VNDPEPEHPLRAELAEEF-LKDRKKFTKNAEEFTKKHSEK 551
+ND EPE P+R+ F L+D F K F KK SEK
Sbjct: 100 INDEEPEFPIRSTRLRSFDLRDGHIFDKG---FQKKPSEK 136
>Z79754-7|CAB02096.2| 387|Caenorhabditis elegans Hypothetical
protein F25H2.8 protein.
Length = 387
Score = 29.5 bits (63), Expect = 2.5
Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 22/133 (16%)
Frame = +3
Query: 99 TMAATRRLQKELNDIRQS-----GLKSFRDIQVDESNILTWQGL--IVPDNP-------- 233
++ AT RL KE+ DI +S G+ +F +++ +E+ W L + D+P
Sbjct: 212 SITATDRLMKEIRDIHRSEHFKNGIYTF-ELEKEENLYQWWIKLHKVDEDSPLFEDMKKL 270
Query: 234 --PYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEK-----GQVCLPIISAENWKP 392
+N+ F ++P PP + ++ P+I++ G +C+ +++ + W
Sbjct: 271 KKDHNQDHLLFSFTFNEKFPCDPPFV----RVVAPHINQGFVLGGGAICMELLTKQGWSS 326
Query: 393 ATKTDQVIQALVA 431
A + I + A
Sbjct: 327 AYSIESCILQIAA 339
>Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical
protein C17D12.5 protein.
Length = 139
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 231 PPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPAT 398
PPY + + + + P ++PF PP I+ KT +K L + WKP+T
Sbjct: 46 PPYTE--YIVTVAIPPKFPFSPPAITCKT--------DKNMKFL-FLEENQWKPST 90
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 28.7 bits (61), Expect = 4.4
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Frame = +3
Query: 216 IVPDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPA 395
+ ++PP A + P P PPK+ K H E+ ++ + KP
Sbjct: 547 LTEEDPPEESAAAAAPEDVPDAAPEDPPKVILKPTPPHRMTQEEKNAHFARLTTDKEKPT 606
Query: 396 TKTDQVIQ-ALVALVNDPEPEHPLRAELAEEFL 491
+ T + Q A V P P LR +E L
Sbjct: 607 SSTSILPQDAAPPHVPPPPPPLVLRPHHQDETL 639
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 480 EEFL-KDRKKFTKNAEEFTKKHSEKRPTD*-IHYKNFKFRFTA 602
EE L DR+ K E + + EKRP +H+K+++FRF A
Sbjct: 1864 EELLGPDREFVLKEVYELWEDYREKRPRICRLHFKDYQFRFFA 1906
>AF537093-1|AAO85552.1| 387|Caenorhabditis elegans ubiquitin
conjugating enzyme UBC-25 protein.
Length = 387
Score = 27.9 bits (59), Expect = 7.7
Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 22/133 (16%)
Frame = +3
Query: 99 TMAATRRLQKELNDIRQS-----GLKSFRDIQVDESNILTWQGL--IVPDNP-------- 233
++ A+ RL KE+ DI +S G+ +F +++ +E+ W L + D+P
Sbjct: 212 SITASDRLMKEIRDIHRSEHFKNGIYTF-ELEKEENLYQWWIKLHKVDEDSPLFEDMKKL 270
Query: 234 --PYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEK-----GQVCLPIISAENWKP 392
+N+ F ++P PP + ++ P+I++ G +C+ +++ + W
Sbjct: 271 KKDHNQDHLLFSFTFNEKFPCDPPFV----RVVAPHINQGFVLGGGAICMELLTKQGWSS 326
Query: 393 ATKTDQVIQALVA 431
A + I + A
Sbjct: 327 AYSIESCILQIAA 339
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,978,606
Number of Sequences: 27780
Number of extensions: 349627
Number of successful extensions: 1023
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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