Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3l21
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    31   0.13 
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    30   0.39 
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    30   0.39 
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    29   0.68 
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    28   1.6  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    27   2.1  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    27   2.8  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   3.6  
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    27   3.6  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    26   4.8  
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    26   4.8  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   4.8  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    26   4.8  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    26   6.4  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    26   6.4  

>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 602 SSNQVTALAWHPTRRLLVVGWDGGELYIWLEYSWAPIRS 718
           ++N VT++ W      L VG D G +YIW   S   +RS
Sbjct: 165 ATNHVTSVLWTGKGTQLAVGTDSGVIYIWDIESTKSVRS 203


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = +2

Query: 476 VAAWHPSLPFLAIGSYNQEKGGFATIFQENGLPLEGCEWPILS-----SNQVTALAWHPT 640
           V  WHP+   L  GSY+      +  F  +    +G +W +       +N V ALA+ P 
Sbjct: 428 VVTWHPTEDLLVSGSYDN-----SICFWRD----DGDDWALTCQLQGHTNTVWALAFSPN 478

Query: 641 RRLLVVGWDGGELYIWLEYS 700
              L    + G +++W++ S
Sbjct: 479 GNTLASADNDGNVFLWIKIS 498



 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 605 SNQVTALAWHPTRRLLVVGWDGGELYIW 688
           +  V  + WHPT  LLV G     +  W
Sbjct: 423 TQDVKVVTWHPTEDLLVSGSYDNSICFW 450


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +2

Query: 503 FLAIGSYNQEKGGFATIFQENGLPLEGCEWPILSSNQVTALAWHPTRRLLVVGWDGGELY 682
           FLAI   N    GF  I+         C++       ++ +AW P    L+VG   G +Y
Sbjct: 215 FLAIARVN----GFVEIWNRK-TKNNRCDYKFHHDGDISCMAWSPINWTLLVGGSTGNIY 269

Query: 683 IW 688
           ++
Sbjct: 270 VY 271


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 21/85 (24%), Positives = 37/85 (43%)
 Frame = +2

Query: 434 DTKLSFSDENVVSTVAAWHPSLPFLAIGSYNQEKGGFATIFQENGLPLEGCEWPILSSNQ 613
           +T  S   E+ + + AAWHP     A+ S +      + I  ++ LPL     P  + + 
Sbjct: 177 NTIASLEAESEICSKAAWHPKNGTFAVASTDH---FVSVISPDDWLPLYKL-LPKENHSG 232

Query: 614 VTALAWHPTRRLLVVGWDGGELYIW 688
           VT ++W      +   +  G + IW
Sbjct: 233 VTDISWSSNGMYIAASFKKGGILIW 257


>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 608 NQVTALAWHPTRRLLVVGWDGGELYIW 688
           +++  L+WHP    L  G + G +++W
Sbjct: 147 DEIVWLSWHPKGLFLAAGCNDGSIWMW 173


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
 Frame = +2

Query: 482 AWHPSLPFLAIGSYNQEKGGF-ATIFQE---NGL--PLEGCE-WPILSSNQVTALAWHPT 640
           ++HPSLP    GS + +   F   ++ +   N L  PL+      ++ +  V +  WHP 
Sbjct: 660 SYHPSLPLFCSGSDDGDVQVFHGRVYSDLLANPLIVPLKILRNHKVVDNVGVLSTCWHPK 719

Query: 641 RRLLVVGWDGGELYIW 688
              L     GGE+ +W
Sbjct: 720 EAWLFSAGAGGEIRMW 735


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 596 ILSSNQVTALAWHPTRRLLVVGWDGGEL 679
           I  +  +T+LA HP   L V G + GEL
Sbjct: 330 ITVAQHITSLAVHPDGNLFVAGLENGEL 357


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 287 IKINRGTIDMLV*CLHHKHAVLCKEYIIFLNLSYCMYIFRNI 162
           + +N  TI  ++  LH  H+   KE++  L   +C Y+FR++
Sbjct: 326 VSLNYTTIVDII-LLHQSHST-SKEWLSSLEQYHCTYLFRDV 365


>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 590 WPILSSNQVTALAWHPTRRLL 652
           W I ++  +  +AWHPT+ +L
Sbjct: 272 WKIPTNGPLNKVAWHPTKHIL 292


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 614 VTALAWHPTRRLLVVGWDGGELYIW 688
           V  +A+HPT+ L V G D  ++ +W
Sbjct: 56  VRGIAFHPTQPLFVSGGDDYKVNVW 80


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 262 ICWFNVYIISMLCCVKNILSF 200
           ICWF    + +LC V++ L+F
Sbjct: 194 ICWFIFTFLVLLCTVRSTLAF 214


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 418 NESRYYFFY*FLVTEFFLLHAIYRFVFA*FTKVKISSKI 302
           N   ++ FY F +   F + A++RF+    T  +I++ I
Sbjct: 538 NARSFFIFYLFTIVITFCMSAVFRFIALLSTTAEIAALI 576


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 605 SNQVTALAWHPTRRLLVVGWDGG 673
           ++++   A+HPT  LLVVG+  G
Sbjct: 254 NSKLRCAAFHPTSNLLVVGFSSG 276


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 611 QVTALAWHPTRRLLVVGWDGGELYI 685
           + T L W+    L+VVG+  GEL I
Sbjct: 70  EATELCWNHDGNLIVVGFKNGELKI 94


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = +2

Query: 629 WHPTRRLLV-VGWDGGELYIW 688
           WHP    +  VG D G +YIW
Sbjct: 306 WHPVFPCVASVGLDSGSIYIW 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,912
Number of Sequences: 5004
Number of extensions: 62116
Number of successful extensions: 187
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)