Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3l21
(733 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB011162-1|BAA25516.2| 1468|Homo sapiens KIAA0590 protein protein. 60 6e-09
Z97652-1|CAM26430.1| 1462|Homo sapiens intraflagellar transport ... 59 1e-08
Z97633-1|CAM26352.1| 1462|Homo sapiens intraflagellar transport ... 59 1e-08
BC035577-1|AAH35577.1| 1462|Homo sapiens intraflagellar transpor... 59 1e-08
AL133297-1|CAM26447.1| 1462|Homo sapiens intraflagellar transpor... 59 1e-08
AL031719-1|CAM26410.1| 1462|Homo sapiens intraflagellar transpor... 59 1e-08
AL031705-1|CAM26342.1| 1462|Homo sapiens intraflagellar transpor... 59 1e-08
AE006467-11|AAK61285.1| 1462|Homo sapiens KIAA0590 protein. 59 1e-08
U86136-1|AAC51107.1| 2627|Homo sapiens telomerase-associated pro... 32 1.8
BC126107-1|AAI26108.1| 2627|Homo sapiens telomerase-associated p... 32 1.8
BC113614-1|AAI13615.1| 1508|Homo sapiens gem (nuclear organelle)... 32 1.8
BC036894-1|AAH36894.1| 746|Homo sapiens GEMIN5 protein protein. 32 1.8
AY063750-1|AAL38980.1| 1508|Homo sapiens WD repeat protein Gemin... 32 1.8
AK074066-1|BAB84892.1| 1512|Homo sapiens FLJ00137 protein protein. 32 1.8
AK022748-1|BAB14222.1| 741|Homo sapiens protein ( Homo sapiens ... 32 1.8
AB209669-1|BAD92906.1| 1903|Homo sapiens Telomerase protein comp... 32 1.8
U18300-1|AAB07897.1| 427|Homo sapiens DDBb p48 protein. 31 3.2
BT007139-1|AAP35803.1| 427|Homo sapiens damage-specific DNA bin... 31 3.2
BC000093-1|AAH00093.1| 427|Homo sapiens damage-specific DNA bin... 31 3.2
AY220533-1|AAO25655.1| 427|Homo sapiens damage-specific DNA bin... 31 3.2
AB107040-1|BAD12560.1| 244|Homo sapiens damage-specific DNA bin... 31 3.2
AB107038-1|BAD12558.1| 156|Homo sapiens damage-specific DNA bin... 31 3.2
AB107037-1|BAD12557.1| 238|Homo sapiens damage-specific DNA bin... 31 3.2
BC014993-1|AAH14993.2| 775|Homo sapiens Hermansky-Pudlak syndro... 30 7.4
BC011594-1|AAH11594.2| 775|Homo sapiens Hermansky-Pudlak syndro... 30 7.4
AL500527-1|CAH72214.1| 775|Homo sapiens Hermansky-Pudlak syndro... 30 7.4
AF536238-1|AAO25965.1| 775|Homo sapiens Hermansky-Pudlak syndro... 30 7.4
>AB011162-1|BAA25516.2| 1468|Homo sapiens KIAA0590 protein protein.
Length = 1468
Score = 60.5 bits (140), Expect = 6e-09
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +2
Query: 416 IMTLYIDTKLSFSDENVVSTVAAWHPSLPFLAIGSYNQEKGGFATIFQENG--LPLEGCE 589
+M LY D ++ D + +WHP PFLA+ + G I+ E G +P E
Sbjct: 6 VMALYYDHQIEAPDAAGSPSFISWHPVHPFLAVAYISTTSTGSVDIYLEQGECVPDTHVE 65
Query: 590 WPILSSNQVTALAWHPTRRLLVVGWDGGELYIW 688
P +V +L WHPTR +L VGW+ GE+ ++
Sbjct: 66 RPF----RVASLCWHPTRLVLAVGWETGEVTVF 94
Score = 31.9 bits (69), Expect = 2.4
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +2
Query: 485 WHPSLPFLAIGSYNQEKGGFATIFQENGLPLEGCEWPILSSNQVTALAWHPTRRLLVVGW 664
WHP+ LA+G + G T+F N E P+ + +T L W P+ L+ G
Sbjct: 75 WHPTRLVLAVGW----ETGEVTVF--NKQDKEQHTMPLTHTADITVLRWSPSGNCLLSGD 128
Query: 665 DGGELYIW 688
G L +W
Sbjct: 129 RLGVLLLW 136
>Z97652-1|CAM26430.1| 1462|Homo sapiens intraflagellar transport 140
homolog (Chlamydomonas) protein.
Length = 1462
Score = 59.3 bits (137), Expect = 1e-08
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +2
Query: 419 MTLYIDTKLSFSDENVVSTVAAWHPSLPFLAIGSYNQEKGGFATIFQENG--LPLEGCEW 592
M LY D ++ D + +WHP PFLA+ + G I+ E G +P E
Sbjct: 1 MALYYDHQIEAPDAAGSPSFISWHPVHPFLAVAYISTTSTGSVDIYLEQGECVPDTHVER 60
Query: 593 PILSSNQVTALAWHPTRRLLVVGWDGGELYIW 688
P +V +L WHPTR +L VGW+ GE+ ++
Sbjct: 61 PF----RVASLCWHPTRLVLAVGWETGEVTVF 88
Score = 31.9 bits (69), Expect = 2.4
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +2
Query: 485 WHPSLPFLAIGSYNQEKGGFATIFQENGLPLEGCEWPILSSNQVTALAWHPTRRLLVVGW 664
WHP+ LA+G + G T+F N E P+ + +T L W P+ L+ G
Sbjct: 69 WHPTRLVLAVGW----ETGEVTVF--NKQDKEQHTMPLTHTADITVLRWSPSGNCLLSGD 122
Query: 665 DGGELYIW 688
G L +W
Sbjct: 123 RLGVLLLW 130
>Z97633-1|CAM26352.1| 1462|Homo sapiens intraflagellar transport 140
homolog (Chlamydomonas) protein.
Length = 1462
Score = 59.3 bits (137), Expect = 1e-08
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +2
Query: 419 MTLYIDTKLSFSDENVVSTVAAWHPSLPFLAIGSYNQEKGGFATIFQENG--LPLEGCEW 592
M LY D ++ D + +WHP PFLA+ + G I+ E G +P E
Sbjct: 1 MALYYDHQIEAPDAAGSPSFISWHPVHPFLAVAYISTTSTGSVDIYLEQGECVPDTHVER 60
Query: 593 PILSSNQVTALAWHPTRRLLVVGWDGGELYIW 688
P +V +L WHPTR +L VGW+ GE+ ++
Sbjct: 61 PF----RVASLCWHPTRLVLAVGWETGEVTVF 88
Score = 31.9 bits (69), Expect = 2.4
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +2
Query: 485 WHPSLPFLAIGSYNQEKGGFATIFQENGLPLEGCEWPILSSNQVTALAWHPTRRLLVVGW 664
WHP+ LA+G + G T+F N E P+ + +T L W P+ L+ G
Sbjct: 69 WHPTRLVLAVGW----ETGEVTVF--NKQDKEQHTMPLTHTADITVLRWSPSGNCLLSGD 122
Query: 665 DGGELYIW 688
G L +W
Sbjct: 123 RLGVLLLW 130
>BC035577-1|AAH35577.1| 1462|Homo sapiens intraflagellar transport
140 homolog (Chlamydomonas) protein.
Length = 1462
Score = 59.3 bits (137), Expect = 1e-08
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +2
Query: 419 MTLYIDTKLSFSDENVVSTVAAWHPSLPFLAIGSYNQEKGGFATIFQENG--LPLEGCEW 592
M LY D ++ D + +WHP PFLA+ + G I+ E G +P E
Sbjct: 1 MALYYDHQIEAPDAAGSPSFISWHPVHPFLAVAYISTTSTGSVDIYLEQGECVPDTHVER 60
Query: 593 PILSSNQVTALAWHPTRRLLVVGWDGGELYIW 688
P +V +L WHPTR +L VGW+ GE+ ++
Sbjct: 61 PF----RVASLCWHPTRLVLAVGWETGEVTVF 88
Score = 31.9 bits (69), Expect = 2.4
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +2
Query: 485 WHPSLPFLAIGSYNQEKGGFATIFQENGLPLEGCEWPILSSNQVTALAWHPTRRLLVVGW 664
WHP+ LA+G + G T+F N E P+ + +T L W P+ L+ G
Sbjct: 69 WHPTRLVLAVGW----ETGEVTVF--NKQDKEQHTMPLTHTADITVLRWSPSGNCLLSGD 122
Query: 665 DGGELYIW 688
G L +W
Sbjct: 123 RLGVLLLW 130
>AL133297-1|CAM26447.1| 1462|Homo sapiens intraflagellar transport
140 homolog (Chlamydomonas) protein.
Length = 1462
Score = 59.3 bits (137), Expect = 1e-08
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +2
Query: 419 MTLYIDTKLSFSDENVVSTVAAWHPSLPFLAIGSYNQEKGGFATIFQENG--LPLEGCEW 592
M LY D ++ D + +WHP PFLA+ + G I+ E G +P E
Sbjct: 1 MALYYDHQIEAPDAAGSPSFISWHPVHPFLAVAYISTTSTGSVDIYLEQGECVPDTHVER 60
Query: 593 PILSSNQVTALAWHPTRRLLVVGWDGGELYIW 688
P +V +L WHPTR +L VGW+ GE+ ++
Sbjct: 61 PF----RVASLCWHPTRLVLAVGWETGEVTVF 88
Score = 31.9 bits (69), Expect = 2.4
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +2
Query: 485 WHPSLPFLAIGSYNQEKGGFATIFQENGLPLEGCEWPILSSNQVTALAWHPTRRLLVVGW 664
WHP+ LA+G + G T+F N E P+ + +T L W P+ L+ G
Sbjct: 69 WHPTRLVLAVGW----ETGEVTVF--NKQDKEQHTMPLTHTADITVLRWSPSGNCLLSGD 122
Query: 665 DGGELYIW 688
G L +W
Sbjct: 123 RLGVLLLW 130
>AL031719-1|CAM26410.1| 1462|Homo sapiens intraflagellar transport
140 homolog (Chlamydomonas) protein.
Length = 1462
Score = 59.3 bits (137), Expect = 1e-08
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +2
Query: 419 MTLYIDTKLSFSDENVVSTVAAWHPSLPFLAIGSYNQEKGGFATIFQENG--LPLEGCEW 592
M LY D ++ D + +WHP PFLA+ + G I+ E G +P E
Sbjct: 1 MALYYDHQIEAPDAAGSPSFISWHPVHPFLAVAYISTTSTGSVDIYLEQGECVPDTHVER 60
Query: 593 PILSSNQVTALAWHPTRRLLVVGWDGGELYIW 688
P +V +L WHPTR +L VGW+ GE+ ++
Sbjct: 61 PF----RVASLCWHPTRLVLAVGWETGEVTVF 88
Score = 31.9 bits (69), Expect = 2.4
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +2
Query: 485 WHPSLPFLAIGSYNQEKGGFATIFQENGLPLEGCEWPILSSNQVTALAWHPTRRLLVVGW 664
WHP+ LA+G + G T+F N E P+ + +T L W P+ L+ G
Sbjct: 69 WHPTRLVLAVGW----ETGEVTVF--NKQDKEQHTMPLTHTADITVLRWSPSGNCLLSGD 122
Query: 665 DGGELYIW 688
G L +W
Sbjct: 123 RLGVLLLW 130
>AL031705-1|CAM26342.1| 1462|Homo sapiens intraflagellar transport
140 homolog (Chlamydomonas) protein.
Length = 1462
Score = 59.3 bits (137), Expect = 1e-08
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +2
Query: 419 MTLYIDTKLSFSDENVVSTVAAWHPSLPFLAIGSYNQEKGGFATIFQENG--LPLEGCEW 592
M LY D ++ D + +WHP PFLA+ + G I+ E G +P E
Sbjct: 1 MALYYDHQIEAPDAAGSPSFISWHPVHPFLAVAYISTTSTGSVDIYLEQGECVPDTHVER 60
Query: 593 PILSSNQVTALAWHPTRRLLVVGWDGGELYIW 688
P +V +L WHPTR +L VGW+ GE+ ++
Sbjct: 61 PF----RVASLCWHPTRLVLAVGWETGEVTVF 88
Score = 31.9 bits (69), Expect = 2.4
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +2
Query: 485 WHPSLPFLAIGSYNQEKGGFATIFQENGLPLEGCEWPILSSNQVTALAWHPTRRLLVVGW 664
WHP+ LA+G + G T+F N E P+ + +T L W P+ L+ G
Sbjct: 69 WHPTRLVLAVGW----ETGEVTVF--NKQDKEQHTMPLTHTADITVLRWSPSGNCLLSGD 122
Query: 665 DGGELYIW 688
G L +W
Sbjct: 123 RLGVLLLW 130
>AE006467-11|AAK61285.1| 1462|Homo sapiens KIAA0590 protein.
Length = 1462
Score = 59.3 bits (137), Expect = 1e-08
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +2
Query: 419 MTLYIDTKLSFSDENVVSTVAAWHPSLPFLAIGSYNQEKGGFATIFQENG--LPLEGCEW 592
M LY D ++ D + +WHP PFLA+ + G I+ E G +P E
Sbjct: 1 MALYYDHQIEAPDAAGSPSFISWHPVHPFLAVAYISTTSTGSVDIYLEQGECVPDTHVER 60
Query: 593 PILSSNQVTALAWHPTRRLLVVGWDGGELYIW 688
P +V +L WHPTR +L VGW+ GE+ ++
Sbjct: 61 PF----RVASLCWHPTRLVLAVGWETGEVTVF 88
Score = 31.9 bits (69), Expect = 2.4
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +2
Query: 485 WHPSLPFLAIGSYNQEKGGFATIFQENGLPLEGCEWPILSSNQVTALAWHPTRRLLVVGW 664
WHP+ LA+G + G T+F N E P+ + +T L W P+ L+ G
Sbjct: 69 WHPTRLVLAVGW----ETGEVTVF--NKQDKEQHTMPLTHTADITVLRWSPSGNCLLSGD 122
Query: 665 DGGELYIW 688
G L +W
Sbjct: 123 RLGVLLLW 130
>U86136-1|AAC51107.1| 2627|Homo sapiens telomerase-associated protein
TP-1 protein.
Length = 2627
Score = 32.3 bits (70), Expect = 1.8
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 602 SSNQVTALAWHPTRRLLVVGWDGGELYIWLE 694
SS VTA+AW P + V G GEL +W E
Sbjct: 2279 SSAAVTAVAWAPDGSMAVSGNQAGELILWQE 2309
>BC126107-1|AAI26108.1| 2627|Homo sapiens telomerase-associated
protein 1 protein.
Length = 2627
Score = 32.3 bits (70), Expect = 1.8
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 602 SSNQVTALAWHPTRRLLVVGWDGGELYIWLE 694
SS VTA+AW P + V G GEL +W E
Sbjct: 2279 SSAAVTAVAWAPDGSMAVSGNQAGELILWQE 2309
>BC113614-1|AAI13615.1| 1508|Homo sapiens gem (nuclear organelle)
associated protein 5 protein.
Length = 1508
Score = 32.3 bits (70), Expect = 1.8
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 608 NQVTALAWHPTRR-LLVVGWDGGELYIWLEYSWAPIRSTS 724
++VTAL WHPT+ L G D G++ ++ YS P + +S
Sbjct: 427 SKVTALCWHPTKEGCLAFGTDDGKVGLYDTYSNKPPQISS 466
>BC036894-1|AAH36894.1| 746|Homo sapiens GEMIN5 protein protein.
Length = 746
Score = 32.3 bits (70), Expect = 1.8
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 608 NQVTALAWHPTRR-LLVVGWDGGELYIWLEYSWAPIRSTS 724
++VTAL WHPT+ L G D G++ ++ YS P + +S
Sbjct: 427 SKVTALCWHPTKEGCLAFGTDDGKVGLYDTYSNKPPQISS 466
>AY063750-1|AAL38980.1| 1508|Homo sapiens WD repeat protein Gemin5
protein.
Length = 1508
Score = 32.3 bits (70), Expect = 1.8
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 608 NQVTALAWHPTRR-LLVVGWDGGELYIWLEYSWAPIRSTS 724
++VTAL WHPT+ L G D G++ ++ YS P + +S
Sbjct: 427 SKVTALCWHPTKEGCLAFGTDDGKVGLYDTYSNKPPQISS 466
>AK074066-1|BAB84892.1| 1512|Homo sapiens FLJ00137 protein protein.
Length = 1512
Score = 32.3 bits (70), Expect = 1.8
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 608 NQVTALAWHPTRR-LLVVGWDGGELYIWLEYSWAPIRSTS 724
++VTAL WHPT+ L G D G++ ++ YS P + +S
Sbjct: 431 SKVTALCWHPTKEGCLAFGTDDGKVGLYDTYSNKPPQISS 470
>AK022748-1|BAB14222.1| 741|Homo sapiens protein ( Homo sapiens
cDNA FLJ12686 fis, clone NT2RM4002527, weakly similar to
VEGETATIBLE INCOMPATIBILITY PROTEIN HET-E-1. ).
Length = 741
Score = 32.3 bits (70), Expect = 1.8
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 608 NQVTALAWHPTRR-LLVVGWDGGELYIWLEYSWAPIRSTS 724
++VTAL WHPT+ L G D G++ ++ YS P + +S
Sbjct: 427 SKVTALCWHPTKEGCLAFGTDDGKVGLYDAYSNKPPQISS 466
>AB209669-1|BAD92906.1| 1903|Homo sapiens Telomerase protein component
1 variant protein.
Length = 1903
Score = 32.3 bits (70), Expect = 1.8
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 602 SSNQVTALAWHPTRRLLVVGWDGGELYIWLE 694
SS VTA+AW P + V G GEL +W E
Sbjct: 1621 SSAAVTAVAWAPDGSMAVSGNQAGELILWQE 1651
>U18300-1|AAB07897.1| 427|Homo sapiens DDBb p48 protein.
Length = 427
Score = 31.5 bits (68), Expect = 3.2
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 611 QVTALAWHPTR-RLLVVGWDGGELYIW 688
+ T+LAWHPT + VG GG++ +W
Sbjct: 113 RATSLAWHPTHPSTVAVGSKGGDIMLW 139
>BT007139-1|AAP35803.1| 427|Homo sapiens damage-specific DNA
binding protein 2, 48kDa protein.
Length = 427
Score = 31.5 bits (68), Expect = 3.2
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 611 QVTALAWHPTR-RLLVVGWDGGELYIW 688
+ T+LAWHPT + VG GG++ +W
Sbjct: 113 RATSLAWHPTHPSTVAVGSKGGDIMLW 139
>BC000093-1|AAH00093.1| 427|Homo sapiens damage-specific DNA
binding protein 2, 48kDa protein.
Length = 427
Score = 31.5 bits (68), Expect = 3.2
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 611 QVTALAWHPTR-RLLVVGWDGGELYIW 688
+ T+LAWHPT + VG GG++ +W
Sbjct: 113 RATSLAWHPTHPSTVAVGSKGGDIMLW 139
>AY220533-1|AAO25655.1| 427|Homo sapiens damage-specific DNA
binding protein 2, 48kDa protein.
Length = 427
Score = 31.5 bits (68), Expect = 3.2
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 611 QVTALAWHPTR-RLLVVGWDGGELYIW 688
+ T+LAWHPT + VG GG++ +W
Sbjct: 113 RATSLAWHPTHPSTVAVGSKGGDIMLW 139
>AB107040-1|BAD12560.1| 244|Homo sapiens damage-specific DNA
binding protein 2 splicing variant D4 protein.
Length = 244
Score = 31.5 bits (68), Expect = 3.2
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 611 QVTALAWHPTR-RLLVVGWDGGELYIW 688
+ T+LAWHPT + VG GG++ +W
Sbjct: 113 RATSLAWHPTHPSTVAVGSKGGDIMLW 139
>AB107038-1|BAD12558.1| 156|Homo sapiens damage-specific DNA
binding protein 2 splicing variant D2 protein.
Length = 156
Score = 31.5 bits (68), Expect = 3.2
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 611 QVTALAWHPTR-RLLVVGWDGGELYIW 688
+ T+LAWHPT + VG GG++ +W
Sbjct: 113 RATSLAWHPTHPSTVAVGSKGGDIMLW 139
>AB107037-1|BAD12557.1| 238|Homo sapiens damage-specific DNA
binding protein 2 splicing variant D1 protein.
Length = 238
Score = 31.5 bits (68), Expect = 3.2
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 611 QVTALAWHPTR-RLLVVGWDGGELYIW 688
+ T+LAWHPT + VG GG++ +W
Sbjct: 113 RATSLAWHPTHPSTVAVGSKGGDIMLW 139
>BC014993-1|AAH14993.2| 775|Homo sapiens Hermansky-Pudlak syndrome
6 protein.
Length = 775
Score = 30.3 bits (65), Expect = 7.4
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +2
Query: 590 WPILSSNQVTA--LAWHPTRRLLVVGWDGGELYIW---LEYSWAPIRSTSQC 730
WP + + A L W P R LV+ W+ G +W + W P++ST C
Sbjct: 71 WPAGQPSPLDAFFLPW-PARPALVLVWESGLAEVWGAGVGPGWRPLQSTELC 121
>BC011594-1|AAH11594.2| 775|Homo sapiens Hermansky-Pudlak syndrome
6 protein.
Length = 775
Score = 30.3 bits (65), Expect = 7.4
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +2
Query: 590 WPILSSNQVTA--LAWHPTRRLLVVGWDGGELYIW---LEYSWAPIRSTSQC 730
WP + + A L W P R LV+ W+ G +W + W P++ST C
Sbjct: 71 WPAGQPSPLDAFFLPW-PARPALVLVWESGLAEVWGAGVGPGWRPLQSTELC 121
>AL500527-1|CAH72214.1| 775|Homo sapiens Hermansky-Pudlak
syndrome-6 protein (HPS6) protein.
Length = 775
Score = 30.3 bits (65), Expect = 7.4
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +2
Query: 590 WPILSSNQVTA--LAWHPTRRLLVVGWDGGELYIW---LEYSWAPIRSTSQC 730
WP + + A L W P R LV+ W+ G +W + W P++ST C
Sbjct: 71 WPAGQPSPLDAFFLPW-PARPALVLVWESGLAEVWGAGVGPGWRPLQSTELC 121
>AF536238-1|AAO25965.1| 775|Homo sapiens Hermansky-Pudlak
syndrome-6 protein protein.
Length = 775
Score = 30.3 bits (65), Expect = 7.4
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +2
Query: 590 WPILSSNQVTA--LAWHPTRRLLVVGWDGGELYIW---LEYSWAPIRSTSQC 730
WP + + A L W P R LV+ W+ G +W + W P++ST C
Sbjct: 71 WPAGQPSPLDAFFLPW-PARPALVLVWESGLAEVWGAGVGPGWRPLQSTELC 121
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,304,481
Number of Sequences: 237096
Number of extensions: 2084626
Number of successful extensions: 12382
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 12106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12367
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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