Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3l20
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    32   0.11 
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    28   1.3  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    27   3.0  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   3.0  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    27   3.0  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   4.0  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    27   4.0  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    27   4.0  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   5.2  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    26   6.9  
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p...    26   6.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.9  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    26   6.9  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.2  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    25   9.2  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 39/133 (29%), Positives = 58/133 (43%)
 Frame = -1

Query: 682 SSGLTNSNGIDSEST*NTFMSCSSLGFPSGLACGVD*ASVGVEPLQYATAFLSKSDRQVG 503
           SS  + S  I S ST +TF S S+   PS ++  +  +S  +     +T+ L  S   + 
Sbjct: 585 SSPSSTSLSISSSSTSSTFSSASTSS-PSSISSSISSSSTILSSPTPSTSSLMISSSSII 643

Query: 502 *RSLSYLPRSISLILLFGTSFVCGNFCSI*SSQVIPSVFISIPSLMYLFSNFFESSGESM 323
             S S L  SIS I +  +        S  SS VIPS    + S   L  +    +  S 
Sbjct: 644 SGSSSILSSSISTIPISSS-------LSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSS 696

Query: 322 LPIVSLK*MLSTF 284
            PI S   ++ST+
Sbjct: 697 SPIPSSSSLVSTY 709


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
 Frame = +3

Query: 99  KMSNCLRSFSHK---ILPINGIATTKNHSNRL----TRKIPMRTQFLEDFLHQRRIS-SC 254
           + S  L S  HK   IL  N +       NRL    T+ +P   +F  DFLH+  +   C
Sbjct: 374 QFSKFLTSDMHKFSTILDSNELKDIYLSKNRLIPSVTKSLPSAMEFDADFLHEVDVCIDC 433

Query: 255 QTASKCVLEKNVDSIYFSDTIGNIDSPELSKKFENRYINDGIEMKTLGITCD 410
            T +        DS+  + T+      E  +    +Y  DG+EM+++  + D
Sbjct: 434 LTLT--------DSLQAALTLYKTAVFEAFENLAQQYFTDGVEMRSVRKSSD 477


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 471 IDLGKYDNDLQPTCLSDFERNAVAYCSGSTPTEAQSTPQANPDGKPSEEQLMKV 632
           ++LG  +  + P CL D   NAVA     T   A        + K SE+   K+
Sbjct: 12  VNLGDSNRAVSPFCLPDCSENAVAQTRSKTLDNAALDLPYVGNRKKSEQDFFKM 65


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 409 SQVIPSVFISIPSLMYLFSNFFESSG 332
           S +  S + SIPS+  + S+FF++SG
Sbjct: 826 SSIASSSYTSIPSISSIASSFFDASG 851


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/70 (20%), Positives = 33/70 (47%)
 Frame = +3

Query: 132 KILPINGIATTKNHSNRLTRKIPMRTQFLEDFLHQRRISSCQTASKCVLEKNVDSIYFSD 311
           K+L ++     +NH+ +L         ++ +F +   +S+        L +N   +Y++D
Sbjct: 229 KMLEVSERVVFENHAAKLKSNFDRAKWYMGNFYNP--VSTAINRVVYSLPRNSKDVYYTD 286

Query: 312 TIGNIDSPEL 341
            +GNI +  +
Sbjct: 287 EVGNITTSHM 296


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 150 GIATTKNHSNRLTRKIPMRTQFLEDFLHQRRIS 248
           GIA TK HS +         Q+L +F+HQR+ S
Sbjct: 489 GIALTKLHSQQYNESTLF--QYLSEFVHQRQKS 519


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = -1

Query: 559 VEPLQYATAFLSKSDRQVG*R--SLSYLPRSISLILLFGT-SFVCGNFCSI*SSQVIPSV 389
           +  L+ ATA +S   + +  +   ++  P + +L+LLF    F+     S  S+ VI SV
Sbjct: 122 ISTLEIATAIISSVCKPILGKFSDITSRPMTYTLVLLFYVIGFIVVASSSTISAYVIGSV 181

Query: 388 FISIPS 371
           FISI S
Sbjct: 182 FISIGS 187


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 1/123 (0%)
 Frame = +3

Query: 312 TIGNIDSPELSKKF-ENRYINDGIEMKTLGITCDDYIEQKLPHTNEVPNSRISDIDLGKY 488
           T  N+   + SK+F EN    D       G     +IE+K P   E     +  +    Y
Sbjct: 217 TDDNVTCSDSSKEFYENAGTKDKTYQSYPGFYHSLHIEKK-PEVYEY----LDKVAAWIY 271

Query: 489 DNDLQPTCLSDFERNAVAYCSGSTPTEAQSTPQANPDGKPSEEQLMKVFHVLSESMPLLF 668
           ++      +   +  AV +     PT   S P A+P G P EE+  K     S+++P   
Sbjct: 272 EHSKPSETVKSEQETAVEH---PKPTATTSAPSASPTGVPVEEESHK---ATSDAVPPAE 325

Query: 669 VRP 677
            +P
Sbjct: 326 AKP 328


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 537 VAYCSGSTPTEAQSTPQANPDGKP 608
           +AY  G+ P   Q+ P  NP G P
Sbjct: 37  MAYHPGNAPLFTQAPPHTNPQGPP 60


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 297 IYFSDTIGNIDSPELSKKFENRY 365
           IYF DT+GN    + S+  +N Y
Sbjct: 497 IYFYDTLGNYQEDDRSEDMQNFY 519


>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 163 VVAIPLIGNILCENDRKQLDIFSDNVIHSYRWKF 62
           VVAI  +G       ++QL +  +NVI S+ + F
Sbjct: 45  VVAIGFVGGSDLSKQQEQLSVNGENVIDSFDYAF 78


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 612 EEQLMKVFHVLSESMPLLFVRPLDYSIYSPNLIFVNNI 725
           +E L+   H+LS ++  LFV+ LD+ +   N++  N +
Sbjct: 326 KELLVATRHILSTNLKSLFVKKLDF-LLDLNILLGNGV 362


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = +3

Query: 186 TRKIPMRTQFLEDFLHQRRISSCQTASKCVLEKNVDSIYFSDTIGNIDSPELSKKFEN 359
           T KI    +     + Q R+S C+   + ++  + D +  + +I ++D+PE+  KF++
Sbjct: 196 TTKIRSSHRITSQSIKQIRLSFCK---RFLIFNSTDRVIRTVSIQDLDNPEVEHKFQD 250


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +3

Query: 144 INGIATTKNHSNRLTRKIPMRTQFLEDFLHQRRISSCQTASKCVLEKNVDSIYFSDTIGN 323
           +  +  +K  +NRL+    MR Q L    ++ ++    +  +  LEK V +IY S    N
Sbjct: 146 VEELLLSKRSTNRLSLLAFMRNQQLNYEAYETKLLEDASTIEKSLEKEVKTIYDS----N 201

Query: 324 IDSPELS 344
           I SP+ S
Sbjct: 202 IASPKES 208


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
 Frame = +3

Query: 402 TCD----DYIEQKLPHTNEVPNS 458
           TCD    DYIEQ  PH  E+ N+
Sbjct: 290 TCDGFTYDYIEQNFPHEAELRNN 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,335,387
Number of Sequences: 5004
Number of extensions: 72212
Number of successful extensions: 216
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)