Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3l20
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 33 0.25
03_02_0224 + 6557284-6558052,6559057-6559131,6560125-6561395 33 0.33
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938 30 2.4
01_05_0099 - 18098169-18098390,18098878-18098972,18099063-180991... 30 2.4
06_03_0203 - 17863130-17863940,17864023-17864341,17864653-178647... 29 4.1
10_08_0355 - 17131178-17131268,17131376-17131429,17131521-171316... 29 5.4
01_07_0357 + 43032552-43033034,43034054-43034383,43035210-430353... 29 5.4
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 28 7.2
06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168 28 9.5
02_02_0365 + 9488328-9488583,9489343-9489495,9491159-9491451,949... 28 9.5
01_01_1054 + 8330081-8330137,8330229-8330321,8330445-8330504,833... 28 9.5
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 33.1 bits (72), Expect = 0.25
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = +3
Query: 402 TCDDYIEQKLPHTNEVPNSRISDIDLGKYDNDLQPTCLSDFERNAVAYCSGSTPTEAQST 581
TC E T+ + S + D+D G + ++ T D +++ ++ SG+TPTE
Sbjct: 2059 TCPSRPEPPETGTHRIEFSAVDDMDTGSCRSPVRDTPDPDNQKSELSG-SGNTPTELSVL 2117
Query: 582 PQANPDGKPSEEQLMKV 632
P + G SE ++ V
Sbjct: 2118 PLVDAPGTSSEPAVVPV 2134
>03_02_0224 + 6557284-6558052,6559057-6559131,6560125-6561395
Length = 704
Score = 32.7 bits (71), Expect = 0.33
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Frame = +3
Query: 240 RISSCQTASKCVLEKNVDSI--YFSDTIGNIDSPELSKKFENRYINDGIEMKTLGITCDD 413
R+S+C + LEK+ +SI T N+D ++ F NR EM+ LG C
Sbjct: 130 RLSNCSIPPEAYLEKSCNSIRCVLPSTKANVDGTNVTDPFLNR-----SEMRRLGSDCRG 184
Query: 414 YIEQKLPHTNEVPNSRISDIDLGKYDNDLQPTCLSDFERNAVAYCSGSTPTEAQ 575
+ + P +++ ++L D +Q C ++ A C G TP Q
Sbjct: 185 LVSASIYSNTAGPALQLTALEL---DWWVQGRC----GCSSHAICDGFTPPSTQ 231
>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
Length = 331
Score = 29.9 bits (64), Expect = 2.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 631 CFMCFLNLCHYCL*DHW 681
CF C+L+ C +C +HW
Sbjct: 25 CFYCWLSFCDHCCKEHW 41
>01_05_0099 -
18098169-18098390,18098878-18098972,18099063-18099131,
18099277-18099352,18101412-18101524,18104137-18104185,
18104540-18104572,18105446-18105552,18106892-18106990,
18107122-18107203
Length = 314
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 459 YCLVLHSCVVTFVQYNHRK 403
YC ++ +C+VTF YNH K
Sbjct: 99 YCFMIDACLVTFSVYNHLK 117
>06_03_0203 -
17863130-17863940,17864023-17864341,17864653-17864716,
17864811-17864929,17865515-17865640,17866626-17866632,
17867421-17867562,17867720-17867738,17868082-17868292
Length = 605
Score = 29.1 bits (62), Expect = 4.1
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Frame = +3
Query: 249 SCQTA--SKCVLEKNVDSIYFSDTIGNIDSPELSKKFENRYINDGIEMKTLGITCDDYIE 422
SC ++ +C V SIY S I +SP K F N TL IT D
Sbjct: 174 SCDSSWSMECTQVLRVKSIYISSAILAAESPFFYKLFSNGMKESDQRHATLRITASDSFY 233
Query: 423 QKLPHTNEVPNSRISDIDLGKYDNDL---QPTCLSD 521
+ +E + + ++ Y L QPT L D
Sbjct: 234 LIIVCLSETEENALMELLSFMYSGKLTTNQPTLLLD 269
>10_08_0355 -
17131178-17131268,17131376-17131429,17131521-17131663,
17131812-17132096,17132168-17132301,17132383-17132556,
17132639-17132707,17132814-17132878,17133441-17133589,
17133747-17133989,17134119-17134255,17134340-17134561,
17134661-17134827,17136680-17136819
Length = 690
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 420 EQKLPHTNEVPNSRISDIDLGKYDNDLQ-PTCLSDFERNAVAY 545
+ KL +PN+RI+D LG YD+D+ TC E +++
Sbjct: 218 DDKLRVAVRLPNNRITDGFLGLYDHDIAIVTCFGLIEVRPISF 260
>01_07_0357 +
43032552-43033034,43034054-43034383,43035210-43035325,
43035589-43035679,43035790-43035860,43036202-43036258,
43036809-43036860,43037139-43037170,43037686-43037753,
43038148-43038353
Length = 501
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 528 RNAVAYCSGSTPTEAQSTPQANPDGKPSEEQLMKVFHVLSE 650
RN++A CS S + TP+A G P + H L +
Sbjct: 35 RNSLAICSASASGDPSPTPEAEGGGNPLLALWRRTLHPLGD 75
>03_05_1122 +
30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 228 LHQRRISSCQTASKCVLEKNVDSIYFSDTIGNIDSPELSKKFENR 362
+H ++ C T +K L+ V + SD I N D P +++ E++
Sbjct: 372 VHHTGVAECDTDTKKKLKGTVTTRRNSDAIANDDPPSITQNKESK 416
>06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168
Length = 536
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 471 IDLGKYDNDLQPTCLSDFERNAVAYCSGSTPTEA-QSTPQAN 593
+D KYD PT +S + N V Y S +P EA S+P A+
Sbjct: 292 LDPAKYD----PTLVSSYLGNVVTYASRESPVEAITSSPLAD 329
>02_02_0365 +
9488328-9488583,9489343-9489495,9491159-9491451,
9491538-9492105,9492503-9493011
Length = 592
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +2
Query: 95 TKNVQLFAIIFAQNITDQRDSYDKKPFQPLD*KDPDADTVS--GRFFTPASNFKLPNRLK 268
TK+ L ++ A ++ RDSY K P L K P A T S G+ K P++++
Sbjct: 181 TKDELLVSVRKAFSMLSGRDSYSKDPNFLLSPKLPTASTSSCDGKDQCTDKPMKGPSQME 240
Query: 269 VC 274
VC
Sbjct: 241 VC 242
>01_01_1054 +
8330081-8330137,8330229-8330321,8330445-8330504,
8330703-8330975,8331107-8331181,8331269-8331325,
8331409-8331549,8331656-8331706,8331795-8331944,
8331974-8332057,8332171-8332273,8332451-8332527,
8333469-8333704,8334000-8334078,8335123-8335218,
8335735-8335828,8336325-8336423,8336663-8337453
Length = 871
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 191 KDPDADTVSGRFFTPASNFKLPNRLK 268
+DP+A +GRF P NFK P+ LK
Sbjct: 360 RDPNARLPNGRFLPPLFNFK-PHELK 384
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,887,097
Number of Sequences: 37544
Number of extensions: 403028
Number of successful extensions: 1052
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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