Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3l20
(778 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX119957-17|CAM25921.1| 433|Homo sapiens chromosome 6 open read... 48 5e-05
BX119957-15|CAM25919.1| 315|Homo sapiens chromosome 6 open read... 48 5e-05
BC064397-1|AAH64397.1| 433|Homo sapiens C6orf136 protein protein. 48 5e-05
AL845353-11|CAI41879.1| 315|Homo sapiens chromosome 6 open read... 48 5e-05
AL732442-10|CAI17760.2| 433|Homo sapiens chromosome 6 open read... 48 5e-05
AL732442-9|CAI17758.1| 315|Homo sapiens chromosome 6 open readi... 48 5e-05
AL662800-21|CAI95540.2| 433|Homo sapiens chromosome 6 open read... 48 5e-05
AL662800-20|CAI18172.2| 315|Homo sapiens chromosome 6 open read... 48 5e-05
AL662798-7|CAI95541.2| 433|Homo sapiens chromosome 6 open readi... 48 5e-05
AL662798-6|CAI18250.2| 315|Homo sapiens chromosome 6 open readi... 48 5e-05
AK127564-1|BAC87037.1| 315|Homo sapiens protein ( Homo sapiens ... 46 2e-04
BC016167-1|AAH16167.1| 172|Homo sapiens chromosome 6 open readi... 39 0.017
AL845353-12|CAI41881.1| 172|Homo sapiens chromosome 6 open read... 39 0.017
AF263312-1|AAG38502.1| 1001|Homo sapiens STE20-like kinase protein. 34 0.66
BC133039-1|AAI33040.1| 1001|Homo sapiens TAO kinase 1 protein. 33 1.5
AY049015-1|AAL12217.1| 1001|Homo sapiens serine/threonine kinase... 33 1.5
AB037782-1|BAA92599.1| 1005|Homo sapiens KIAA1361 protein protein. 33 1.5
BX119957-16|CAM25920.1| 181|Homo sapiens chromosome 6 open read... 32 2.0
AL845353-10|CAI41880.1| 181|Homo sapiens chromosome 6 open read... 32 2.0
AL732442-8|CAI17759.1| 181|Homo sapiens chromosome 6 open readi... 32 2.0
AL662800-19|CAI18171.1| 181|Homo sapiens chromosome 6 open read... 32 2.0
AL662798-5|CAI18249.1| 181|Homo sapiens chromosome 6 open readi... 32 2.0
AK024376-1|BAB14901.1| 398|Homo sapiens protein ( Homo sapiens ... 31 3.5
BC108310-1|AAI08311.1| 376|Homo sapiens WW domain binding prote... 30 8.1
BC104879-1|AAI04880.1| 376|Homo sapiens WW domain-containing bi... 30 8.1
AL157877-5|CAI13223.1| 376|Homo sapiens WW domain binding prote... 30 8.1
AF071185-1|AAC34811.1| 376|Homo sapiens formin binding protein ... 30 8.1
>BX119957-17|CAM25921.1| 433|Homo sapiens chromosome 6 open reading
frame 136 protein.
Length = 433
Score = 47.6 bits (108), Expect = 5e-05
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +3
Query: 540 AYCSGSTPTEAQSTPQANPDGKPS-EEQLMKVFHVLSESMPLLFVRPLDYSIYSPNLIFV 716
A+ P A +P A P G PS EE L ++ L + +P LF++ DYS+YS ++ F+
Sbjct: 239 AWIPFQVPGTAHPSP-ATPSGDPSMEEHLSVMYERLRQELPKLFLQSHDYSLYSLDVEFI 297
Query: 717 NNIRGKTTVGLFHYVKQVAL 776
N I T G Y+ + L
Sbjct: 298 NEILNIRTKGRTWYILSLTL 317
>BX119957-15|CAM25919.1| 315|Homo sapiens chromosome 6 open reading
frame 136 protein.
Length = 315
Score = 47.6 bits (108), Expect = 5e-05
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +3
Query: 540 AYCSGSTPTEAQSTPQANPDGKPS-EEQLMKVFHVLSESMPLLFVRPLDYSIYSPNLIFV 716
A+ P A +P A P G PS EE L ++ L + +P LF++ DYS+YS ++ F+
Sbjct: 121 AWIPFQVPGTAHPSP-ATPSGDPSMEEHLSVMYERLRQELPKLFLQSHDYSLYSLDVEFI 179
Query: 717 NNIRGKTTVGLFHYVKQVAL 776
N I T G Y+ + L
Sbjct: 180 NEILNIRTKGRTWYILSLTL 199
>BC064397-1|AAH64397.1| 433|Homo sapiens C6orf136 protein protein.
Length = 433
Score = 47.6 bits (108), Expect = 5e-05
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +3
Query: 540 AYCSGSTPTEAQSTPQANPDGKPS-EEQLMKVFHVLSESMPLLFVRPLDYSIYSPNLIFV 716
A+ P A +P A P G PS EE L ++ L + +P LF++ DYS+YS ++ F+
Sbjct: 239 AWIPFQVPGTAHPSP-ATPSGDPSMEEHLSVMYERLRQELPKLFLQSHDYSLYSLDVEFI 297
Query: 717 NNIRGKTTVGLFHYVKQVAL 776
N I T G Y+ + L
Sbjct: 298 NEILNIRTKGRTWYILSLTL 317
>AL845353-11|CAI41879.1| 315|Homo sapiens chromosome 6 open reading
frame 136 protein.
Length = 315
Score = 47.6 bits (108), Expect = 5e-05
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +3
Query: 540 AYCSGSTPTEAQSTPQANPDGKPS-EEQLMKVFHVLSESMPLLFVRPLDYSIYSPNLIFV 716
A+ P A +P A P G PS EE L ++ L + +P LF++ DYS+YS ++ F+
Sbjct: 121 AWIPFQVPGTAHPSP-ATPSGDPSMEEHLSVMYERLRQELPKLFLQSHDYSLYSLDVEFI 179
Query: 717 NNIRGKTTVGLFHYVKQVAL 776
N I T G Y+ + L
Sbjct: 180 NEILNIRTKGRTWYILSLTL 199
>AL732442-10|CAI17760.2| 433|Homo sapiens chromosome 6 open reading
frame 136 protein.
Length = 433
Score = 47.6 bits (108), Expect = 5e-05
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +3
Query: 540 AYCSGSTPTEAQSTPQANPDGKPS-EEQLMKVFHVLSESMPLLFVRPLDYSIYSPNLIFV 716
A+ P A +P A P G PS EE L ++ L + +P LF++ DYS+YS ++ F+
Sbjct: 239 AWIPFQVPGTAHPSP-ATPSGDPSMEEHLSVMYERLRQELPKLFLQSHDYSLYSLDVEFI 297
Query: 717 NNIRGKTTVGLFHYVKQVAL 776
N I T G Y+ + L
Sbjct: 298 NEILNIRTKGRTWYILSLTL 317
>AL732442-9|CAI17758.1| 315|Homo sapiens chromosome 6 open reading
frame 136 protein.
Length = 315
Score = 47.6 bits (108), Expect = 5e-05
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +3
Query: 540 AYCSGSTPTEAQSTPQANPDGKPS-EEQLMKVFHVLSESMPLLFVRPLDYSIYSPNLIFV 716
A+ P A +P A P G PS EE L ++ L + +P LF++ DYS+YS ++ F+
Sbjct: 121 AWIPFQVPGTAHPSP-ATPSGDPSMEEHLSVMYERLRQELPKLFLQSHDYSLYSLDVEFI 179
Query: 717 NNIRGKTTVGLFHYVKQVAL 776
N I T G Y+ + L
Sbjct: 180 NEILNIRTKGRTWYILSLTL 199
>AL662800-21|CAI95540.2| 433|Homo sapiens chromosome 6 open reading
frame 136 protein.
Length = 433
Score = 47.6 bits (108), Expect = 5e-05
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +3
Query: 540 AYCSGSTPTEAQSTPQANPDGKPS-EEQLMKVFHVLSESMPLLFVRPLDYSIYSPNLIFV 716
A+ P A +P A P G PS EE L ++ L + +P LF++ DYS+YS ++ F+
Sbjct: 239 AWIPFQVPGTAHPSP-ATPSGDPSMEEHLSVMYERLRQELPKLFLQSHDYSLYSLDVEFI 297
Query: 717 NNIRGKTTVGLFHYVKQVAL 776
N I T G Y+ + L
Sbjct: 298 NEILNIRTKGRTWYILSLTL 317
>AL662800-20|CAI18172.2| 315|Homo sapiens chromosome 6 open reading
frame 136 protein.
Length = 315
Score = 47.6 bits (108), Expect = 5e-05
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +3
Query: 540 AYCSGSTPTEAQSTPQANPDGKPS-EEQLMKVFHVLSESMPLLFVRPLDYSIYSPNLIFV 716
A+ P A +P A P G PS EE L ++ L + +P LF++ DYS+YS ++ F+
Sbjct: 121 AWIPFQVPGTAHPSP-ATPSGDPSMEEHLSVMYERLRQELPKLFLQSHDYSLYSLDVEFI 179
Query: 717 NNIRGKTTVGLFHYVKQVAL 776
N I T G Y+ + L
Sbjct: 180 NEILNIRTKGRTWYILSLTL 199
>AL662798-7|CAI95541.2| 433|Homo sapiens chromosome 6 open reading
frame 136 protein.
Length = 433
Score = 47.6 bits (108), Expect = 5e-05
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +3
Query: 540 AYCSGSTPTEAQSTPQANPDGKPS-EEQLMKVFHVLSESMPLLFVRPLDYSIYSPNLIFV 716
A+ P A +P A P G PS EE L ++ L + +P LF++ DYS+YS ++ F+
Sbjct: 239 AWIPFQVPGTAHPSP-ATPSGDPSMEEHLSVMYERLRQELPKLFLQSHDYSLYSLDVEFI 297
Query: 717 NNIRGKTTVGLFHYVKQVAL 776
N I T G Y+ + L
Sbjct: 298 NEILNIRTKGRTWYILSLTL 317
>AL662798-6|CAI18250.2| 315|Homo sapiens chromosome 6 open reading
frame 136 protein.
Length = 315
Score = 47.6 bits (108), Expect = 5e-05
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +3
Query: 540 AYCSGSTPTEAQSTPQANPDGKPS-EEQLMKVFHVLSESMPLLFVRPLDYSIYSPNLIFV 716
A+ P A +P A P G PS EE L ++ L + +P LF++ DYS+YS ++ F+
Sbjct: 121 AWIPFQVPGTAHPSP-ATPSGDPSMEEHLSVMYERLRQELPKLFLQSHDYSLYSLDVEFI 179
Query: 717 NNIRGKTTVGLFHYVKQVAL 776
N I T G Y+ + L
Sbjct: 180 NEILNIRTKGRTWYILSLTL 199
>AK127564-1|BAC87037.1| 315|Homo sapiens protein ( Homo sapiens
cDNA FLJ45657 fis, clone CTONG2014959. ).
Length = 315
Score = 46.0 bits (104), Expect = 2e-04
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +3
Query: 540 AYCSGSTPTEAQSTPQANPDGKPS-EEQLMKVFHVLSESMPLLFVRPLDYSIYSPNLIFV 716
A+ P A +P A P G PS EE L ++ L + +P LF++ DYS+YS ++ F+
Sbjct: 121 AWIPFQVPGTAHPSP-ATPSGDPSMEEHLSVMYERLRQELPKLFLQSHDYSLYSLDVEFI 179
Query: 717 NNIRGKTTVGLFHYVKQVAL 776
N I + G Y+ + L
Sbjct: 180 NEILNIRSKGRTWYILSLTL 199
>BC016167-1|AAH16167.1| 172|Homo sapiens chromosome 6 open reading
frame 136 protein.
Length = 172
Score = 39.1 bits (87), Expect = 0.017
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +3
Query: 612 EEQLMKVFHVLSESMPLLFVRPLDYSIYSPNLIFVNNIRGKTTVGLFHYVKQVAL 776
EE L ++ L + +P LF++ DYS+YS ++ F+N I T G Y+ + L
Sbjct: 2 EEHLSVMYERLRQELPKLFLQSHDYSLYSLDVEFINEILNIRTKGRTWYILSLTL 56
>AL845353-12|CAI41881.1| 172|Homo sapiens chromosome 6 open reading
frame 136 protein.
Length = 172
Score = 39.1 bits (87), Expect = 0.017
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +3
Query: 612 EEQLMKVFHVLSESMPLLFVRPLDYSIYSPNLIFVNNIRGKTTVGLFHYVKQVAL 776
EE L ++ L + +P LF++ DYS+YS ++ F+N I T G Y+ + L
Sbjct: 2 EEHLSVMYERLRQELPKLFLQSHDYSLYSLDVEFINEILNIRTKGRTWYILSLTL 56
>AF263312-1|AAG38502.1| 1001|Homo sapiens STE20-like kinase protein.
Length = 1001
Score = 33.9 bits (74), Expect = 0.66
Identities = 30/107 (28%), Positives = 48/107 (44%)
Frame = +3
Query: 330 SPELSKKFENRYINDGIEMKTLGITCDDYIEQKLPHTNEVPNSRISDIDLGKYDNDLQPT 509
+PE+ + + +++ +LGITC + E+K P N S + I + LQ
Sbjct: 190 APEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNE-SPTLQSN 248
Query: 510 CLSDFERNAVAYCSGSTPTEAQSTPQANPDGKPSEEQLMKVFHVLSE 650
SD+ RN+V C Q P +P+ E+L+K VL E
Sbjct: 249 EWSDYFRNSVDSCL-----------QKIPQDRPTSEELLKHIFVLRE 284
>BC133039-1|AAI33040.1| 1001|Homo sapiens TAO kinase 1 protein.
Length = 1001
Score = 32.7 bits (71), Expect = 1.5
Identities = 30/107 (28%), Positives = 47/107 (43%)
Frame = +3
Query: 330 SPELSKKFENRYINDGIEMKTLGITCDDYIEQKLPHTNEVPNSRISDIDLGKYDNDLQPT 509
+PE+ + + +++ +LGITC + E+K P N S + I + LQ
Sbjct: 190 APEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNE-SPTLQSN 248
Query: 510 CLSDFERNAVAYCSGSTPTEAQSTPQANPDGKPSEEQLMKVFHVLSE 650
SD+ RN V C Q P +P+ E+L+K VL E
Sbjct: 249 EWSDYFRNFVDSCL-----------QKIPQDRPTSEELLKHIFVLRE 284
>AY049015-1|AAL12217.1| 1001|Homo sapiens serine/threonine kinase
TAO1 protein.
Length = 1001
Score = 32.7 bits (71), Expect = 1.5
Identities = 30/107 (28%), Positives = 47/107 (43%)
Frame = +3
Query: 330 SPELSKKFENRYINDGIEMKTLGITCDDYIEQKLPHTNEVPNSRISDIDLGKYDNDLQPT 509
+PE+ + + +++ +LGITC + E+K P N S + I + LQ
Sbjct: 190 APEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNE-SPTLQSN 248
Query: 510 CLSDFERNAVAYCSGSTPTEAQSTPQANPDGKPSEEQLMKVFHVLSE 650
SD+ RN V C Q P +P+ E+L+K VL E
Sbjct: 249 EWSDYFRNFVDSCL-----------QKIPQDRPTSEELLKHIFVLRE 284
>AB037782-1|BAA92599.1| 1005|Homo sapiens KIAA1361 protein protein.
Length = 1005
Score = 32.7 bits (71), Expect = 1.5
Identities = 30/107 (28%), Positives = 47/107 (43%)
Frame = +3
Query: 330 SPELSKKFENRYINDGIEMKTLGITCDDYIEQKLPHTNEVPNSRISDIDLGKYDNDLQPT 509
+PE+ + + +++ +LGITC + E+K P N S + I + LQ
Sbjct: 194 APEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNE-SPTLQSN 252
Query: 510 CLSDFERNAVAYCSGSTPTEAQSTPQANPDGKPSEEQLMKVFHVLSE 650
SD+ RN V C Q P +P+ E+L+K VL E
Sbjct: 253 EWSDYFRNFVDSCL-----------QKIPQDRPTSEELLKHIFVLRE 288
>BX119957-16|CAM25920.1| 181|Homo sapiens chromosome 6 open reading
frame 136 protein.
Length = 181
Score = 32.3 bits (70), Expect = 2.0
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 654 MPLLFVRPLDYSIYSPNLIFVNNIRGKTTVGLFHYVKQVAL 776
+P LF++ DYS+YS ++ F+N I T G Y+ + L
Sbjct: 25 LPKLFLQSHDYSLYSLDVEFINEILNIRTKGRTWYILSLTL 65
>AL845353-10|CAI41880.1| 181|Homo sapiens chromosome 6 open reading
frame 136 protein.
Length = 181
Score = 32.3 bits (70), Expect = 2.0
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 654 MPLLFVRPLDYSIYSPNLIFVNNIRGKTTVGLFHYVKQVAL 776
+P LF++ DYS+YS ++ F+N I T G Y+ + L
Sbjct: 25 LPKLFLQSHDYSLYSLDVEFINEILNIRTKGRTWYILSLTL 65
>AL732442-8|CAI17759.1| 181|Homo sapiens chromosome 6 open reading
frame 136 protein.
Length = 181
Score = 32.3 bits (70), Expect = 2.0
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 654 MPLLFVRPLDYSIYSPNLIFVNNIRGKTTVGLFHYVKQVAL 776
+P LF++ DYS+YS ++ F+N I T G Y+ + L
Sbjct: 25 LPKLFLQSHDYSLYSLDVEFINEILNIRTKGRTWYILSLTL 65
>AL662800-19|CAI18171.1| 181|Homo sapiens chromosome 6 open reading
frame 136 protein.
Length = 181
Score = 32.3 bits (70), Expect = 2.0
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 654 MPLLFVRPLDYSIYSPNLIFVNNIRGKTTVGLFHYVKQVAL 776
+P LF++ DYS+YS ++ F+N I T G Y+ + L
Sbjct: 25 LPKLFLQSHDYSLYSLDVEFINEILNIRTKGRTWYILSLTL 65
>AL662798-5|CAI18249.1| 181|Homo sapiens chromosome 6 open reading
frame 136 protein.
Length = 181
Score = 32.3 bits (70), Expect = 2.0
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 654 MPLLFVRPLDYSIYSPNLIFVNNIRGKTTVGLFHYVKQVAL 776
+P LF++ DYS+YS ++ F+N I T G Y+ + L
Sbjct: 25 LPKLFLQSHDYSLYSLDVEFINEILNIRTKGRTWYILSLTL 65
>AK024376-1|BAB14901.1| 398|Homo sapiens protein ( Homo sapiens
cDNA FLJ14314 fis, clone PLACE3000350, weakly similar to
SERINE/THREONINE-PROTEIN KINASE SULU (EC 2.7.1.-). ).
Length = 398
Score = 31.5 bits (68), Expect = 3.5
Identities = 29/107 (27%), Positives = 47/107 (43%)
Frame = +3
Query: 330 SPELSKKFENRYINDGIEMKTLGITCDDYIEQKLPHTNEVPNSRISDIDLGKYDNDLQPT 509
+PE+ + + +++ +LGITC + E+K P N S + I + LQ
Sbjct: 16 APEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNE-SPTLQSN 74
Query: 510 CLSDFERNAVAYCSGSTPTEAQSTPQANPDGKPSEEQLMKVFHVLSE 650
+D+ RN V C Q P +P+ E+L+K VL E
Sbjct: 75 EWTDYFRNFVDSCL-----------QKIPQDRPTSEELLKHIFVLRE 110
>BC108310-1|AAI08311.1| 376|Homo sapiens WW domain binding protein
4 (formin binding protein 21) protein.
Length = 376
Score = 30.3 bits (65), Expect = 8.1
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 429 LPHTNEVPNSRISDIDLGKYDNDLQPTCLSDFERNAVAYCSG-STPTE 569
+PHT+++P+S++++ LG D SD + A G ST TE
Sbjct: 198 IPHTSDLPSSKVNENSLGTLDESKSSDSHSDSDGEQEAEEGGVSTETE 245
>BC104879-1|AAI04880.1| 376|Homo sapiens WW domain-containing
binding protein 4 protein.
Length = 376
Score = 30.3 bits (65), Expect = 8.1
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 429 LPHTNEVPNSRISDIDLGKYDNDLQPTCLSDFERNAVAYCSG-STPTE 569
+PHT+++P+S++++ LG D SD + A G ST TE
Sbjct: 198 IPHTSDLPSSKVNENSLGTLDESKSSDSHSDSDGEQEAEEGGVSTETE 245
>AL157877-5|CAI13223.1| 376|Homo sapiens WW domain binding protein
4 (formin binding protein 21) protein.
Length = 376
Score = 30.3 bits (65), Expect = 8.1
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 429 LPHTNEVPNSRISDIDLGKYDNDLQPTCLSDFERNAVAYCSG-STPTE 569
+PHT+++P+S++++ LG D SD + A G ST TE
Sbjct: 198 IPHTSDLPSSKVNENSLGTLDESKSSDSHSDSDGEQEAEEGGVSTETE 245
>AF071185-1|AAC34811.1| 376|Homo sapiens formin binding protein 21
protein.
Length = 376
Score = 30.3 bits (65), Expect = 8.1
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 429 LPHTNEVPNSRISDIDLGKYDNDLQPTCLSDFERNAVAYCSG-STPTE 569
+PHT+++P+S++++ LG D SD + A G ST TE
Sbjct: 198 IPHTSDLPSSKVNENSLGTLDESKSSDSHSDSDGEQEAEEGGVSTETE 245
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,661,155
Number of Sequences: 237096
Number of extensions: 2279179
Number of successful extensions: 4963
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 4737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4948
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -