Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3l20
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92973-2|CAB07492.2|  964|Caenorhabditis elegans Hypothetical pr...    33   0.23 
Z54236-3|CAA90985.1|  196|Caenorhabditis elegans Hypothetical pr...    33   0.23 
Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AF022985-6|AAB69963.1|  457|Caenorhabditis elegans Hypothetical ...    30   2.1  
AC024790-1|AAK84609.1|  315|Caenorhabditis elegans Hypothetical ...    29   2.8  
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    29   2.8  
Z69383-2|CAA93408.2|  318|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81494-5|CAB04053.1|  419|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AL032657-8|CAB63370.1|  389|Caenorhabditis elegans Hypothetical ...    28   6.5  
AL023835-9|CAA19493.2|  397|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z68215-2|CAA92451.2|  452|Caenorhabditis elegans Hypothetical pr...    28   8.6  
U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical p...    28   8.6  
AL117206-6|CAB60450.1|  734|Caenorhabditis elegans Hypothetical ...    28   8.6  

>Z92973-2|CAB07492.2|  964|Caenorhabditis elegans Hypothetical protein
            Y6G8.2 protein.
          Length = 964

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
 Frame = +3

Query: 159  TTKNHSNRLTRKIPMRTQFLEDFLHQRRISSCQTASKCVLEKNVDSIYFSDTIGNIDSPE 338
            + KN  + L  ++ +RT  +ED +H + I    +A++   +    S    D    + +P 
Sbjct: 844  SVKNIEHFLRVEVTLRTISVEDLVHLKEIFKTSSANR-KFDIKARSFDAEDLTPTLGAPS 902

Query: 339  LSKKFENRYIND----GIEMKTLGITCDDYIE 422
            LS K E   ++      +EM      C DY+E
Sbjct: 903  LSNKIEQNVVHKKWFFKMEMDRRRAVCIDYLE 934


>Z54236-3|CAA90985.1|  196|Caenorhabditis elegans Hypothetical
           protein C27B7.2 protein.
          Length = 196

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +3

Query: 603 KPSEEQLMKVFHVLSESMPLLFVRPLDYSIYSPNLI 710
           KP+  QL  V   L+E++PL+F R +DY+ Y  +++
Sbjct: 29  KPAPHQLEHVTTRLTETVPLMFRRRMDYTFYRKDVV 64


>Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical
           protein F16A11.3b protein.
          Length = 1364

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = +3

Query: 285 NVDSIYFSDTIGNIDSPELSKKFENRYINDGIEMKTLGITCDDYIEQKLPHTNEVPNSRI 464
           N DS   S++  N  S + +        +   ++  LG+  DDY+E   P  N   +S  
Sbjct: 535 NSDSTLSSNSSNNNSSEQQNSTGIAAKCSSTDDLTKLGLEDDDYMENSGPKFNTDEDS-T 593

Query: 465 SDIDLGKYDNDLQPTCLSD 521
           +D D    DND + + ++D
Sbjct: 594 NDSDSDDEDNDFEKSFVAD 612


>Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical
           protein F16A11.3b protein.
          Length = 1364

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = +3

Query: 285 NVDSIYFSDTIGNIDSPELSKKFENRYINDGIEMKTLGITCDDYIEQKLPHTNEVPNSRI 464
           N DS   S++  N  S + +        +   ++  LG+  DDY+E   P  N   +S  
Sbjct: 535 NSDSTLSSNSSNNNSSEQQNSTGIAAKCSSTDDLTKLGLEDDDYMENSGPKFNTDEDS-T 593

Query: 465 SDIDLGKYDNDLQPTCLSD 521
           +D D    DND + + ++D
Sbjct: 594 NDSDSDDEDNDFEKSFVAD 612


>AF022985-6|AAB69963.1|  457|Caenorhabditis elegans Hypothetical
           protein T15B7.7 protein.
          Length = 457

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
 Frame = +3

Query: 87  TLSLKMSNCLRSF-SHKILPINGIATT---------KNHSNRLTRKIPMRTQFLED---- 224
           T+S + ++  RSF S KIL ++G+  +         +N  N L + +    Q  ED    
Sbjct: 65  TVSFRTTDIWRSFISQKILHLSGLTVSFVPTNAVQFRNAHNYL-KDLKDEKQVYEDSGRM 123

Query: 225 --FLHQRRISSCQTASKCVLEKNVDSIYFSDTIGNIDSPELSKKFENRYINDGIEMKTLG 398
             FLH  + S+  ++  C++E   D +     +G  D+ +L + F N     G +   L 
Sbjct: 124 IEFLHNWKCSTRNSSQNCIIEMTNDLVK-KKLLGKEDA-KLMEMFLNDLTEMGFKFPIL- 180

Query: 399 ITCDDYIEQKLPHTNE 446
              +D+++   P TNE
Sbjct: 181 -IENDFLDPYAPSTNE 195


>AC024790-1|AAK84609.1|  315|Caenorhabditis elegans Hypothetical
           protein Y47D7A.3 protein.
          Length = 315

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
 Frame = +3

Query: 126 SHKILPINGIATTKNHSNRLTRKIP-MRTQFLEDFLHQR-----RISSCQTASKCVLEKN 287
           + K +P N   T  + S+ L  K+P   TQ L +   +       +SSC      +    
Sbjct: 189 NQKKIPSNMCLTRNHSSDPLPPKMPHASTQILSNARDRYIQCMINVSSCSEVQSALRLAE 248

Query: 288 VDSIYFSDTIGNIDSPELSKKFEN 359
           +  I+ S T+G ++  + SK F+N
Sbjct: 249 ISLIFPSITVGKLNGIKNSKSFQN 272


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -1

Query: 355 SNFFESSGESMLPIVSLK*MLSTFFSNTHFEAVWQLEIRRWCKKSSRNC 209
           ++F +  G+S + I  L   + +FF+     A++  E+  W KK+ + C
Sbjct: 282 NDFSKEYGDSSMAIGKLSSRIHSFFNKECESAIFNCELMLWDKKTKKLC 330


>Z69383-2|CAA93408.2|  318|Caenorhabditis elegans Hypothetical
           protein F13E9.5 protein.
          Length = 318

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 132 KILPINGIATTKNHSNRLTRKIPMRTQFLEDFLHQRRIS 248
           K LP+     TKN++  +   I  +  F ED + Q+R+S
Sbjct: 116 KDLPVTNRKATKNYTRAVKNAINQKADFEEDEVDQKRLS 154


>Z81494-5|CAB04053.1|  419|Caenorhabditis elegans Hypothetical
           protein F02E9.7 protein.
          Length = 419

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 186 TRKIP-MRTQFLEDFLHQRRISSCQTASKCVLEKNVDSIYFSDTIGNIDSPELSKKFENR 362
           T  IP + T + ++ + Q   S     S  ++    D+IYF+      D P    +FEN 
Sbjct: 88  TGGIPILETTWAQNEVKQTMASLADEHSVQMILNMGDNIYFTGPTDEFD-PRFESRFENV 146

Query: 363 YINDGIEMKTLGI 401
           Y N  +++  L I
Sbjct: 147 YTNPSLQVPWLTI 159


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical
           protein F52B5.3 protein.
          Length = 1425

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/57 (24%), Positives = 31/57 (54%)
 Frame = +3

Query: 567 EAQSTPQANPDGKPSEEQLMKVFHVLSESMPLLFVRPLDYSIYSPNLIFVNNIRGKT 737
           E  S P + PDG   +E+ M+ +  +  +  +  V  +++   +PN +F+N+++  T
Sbjct: 447 EWTSGPCSTPDGDIIDERAMRQYMNIIGNPDIRPVITVEFRPTTPNSVFINDVKYTT 503


>AL032657-8|CAB63370.1|  389|Caenorhabditis elegans Hypothetical
           protein Y47H9C.8 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 228 LHQRRISSCQTASKCVLEKNVDSIYFSDTIGNIDSPELSKKFENRYINDGIEMKTL 395
           L  +R  + Q + +  LE+ ++     D    ++ PE++ +   R I DGI  KTL
Sbjct: 16  LPAKRPGTSQNSIRAALEEKLERSPIEDLELQLEQPEINVEEVGRIIADGIIEKTL 71


>AL023835-9|CAA19493.2|  397|Caenorhabditis elegans Hypothetical
           protein Y37A1B.10 protein.
          Length = 397

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 360 RYINDGIEMKTLGITCDDYIEQKLPHTNEVPNSRISD 470
           R + DG++     + C++ ++ ++PHT  V NSRI D
Sbjct: 194 RVVEDGLQAS---LYCEEPLDFEVPHTYIVGNSRIFD 227


>Z68215-2|CAA92451.2|  452|Caenorhabditis elegans Hypothetical
           protein C53B4.2 protein.
          Length = 452

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 597 DGKPSEEQLMKVFHVLSESMPLLFVRPLDYSIYSPNLIFVNNIRGKTTV 743
           +GK + + +     VL E  P      LD   + P+L+F N +R    V
Sbjct: 313 EGKLTLKTIKSAKLVLDEYQPSCLFMKLDEKFFHPHLVFSNTVRSLINV 361


>U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical
            protein C06A5.1 protein.
          Length = 1932

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 354  ENRYINDGIEMKTLGITCDDYIEQKLPHTNEVPNSRISDIDLGKYDN 494
            +N  I +   + T  +TC ++  QK+  +NEVP++ +    L KYDN
Sbjct: 1072 KNHQIKNITSLDT-SLTCIEFGNQKIALSNEVPSAIVK--LLSKYDN 1115


>AL117206-6|CAB60450.1|  734|Caenorhabditis elegans Hypothetical
           protein Y67A10A.9 protein.
          Length = 734

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 408 DDYIEQKLPHTNEVPNSRISDIDLGKYDNDLQPT 509
           +DY+E K    N + NS +S ID+      LQ T
Sbjct: 442 EDYLEPKSVRNNRLSNSTLSTIDMEHNQKMLQKT 475


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,282,178
Number of Sequences: 27780
Number of extensions: 401665
Number of successful extensions: 1194
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)