Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3l20
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              23   3.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   4.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.7  

>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +3

Query: 354 ENRYINDGIEMKT----LGITCDDYIEQKLPHTNE 446
           E +Y +D  ++KT    + +TC+D + +K  H N+
Sbjct: 97  EGQY-HDDEDLKTFFHKIALTCEDDVHRKFLHVND 130


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 597 DGKPSEEQLMKVFHV 641
           +GKP+E  L  VFHV
Sbjct: 409 NGKPAEGMLTDVFHV 423


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 673 LTNSNGIDSEST*NTFMSCSSLGFP 599
           + N NG+ +ES  +  + C + GFP
Sbjct: 216 MDNINGLSTESKADLPLLCPAQGFP 240


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 153  IATTKNHSNRLTRKIPMRTQFLEDFLHQRRISSCQT 260
            +ATT +H+N+L R+     Q     + Q + SS Q+
Sbjct: 1140 LATTASHANQLNRQGKQVIQTQYQVVSQAQTSSGQS 1175


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 94 DNVIHSYRWKF*NI*KMCRK 35
          D ++H + WK+ +I K C +
Sbjct: 31 DAIVHLFEWKWNDIAKECEQ 50


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/54 (22%), Positives = 24/54 (44%)
 Frame = -1

Query: 481 PRSISLILLFGTSFVCGNFCSI*SSQVIPSVFISIPSLMYLFSNFFESSGESML 320
           P S   +++   +F+   FC +     IP   I +P+LM  +      +  S++
Sbjct: 269 PSSTERMIIANLNFILHLFCLLDVQWRIPFNGIQMPNLMVFYEKSLALAAFSLM 322


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 631 CFMCFLNLCHYCL*DHWI 684
           C   FLN   YC+   WI
Sbjct: 149 CLFSFLNTIVYCVPAGWI 166


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 698  TVDGIIQWSHKQ*WHRFR 645
            T   I+ W+ K+ W R R
Sbjct: 1184 TAAAILTWNEKRFWERLR 1201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,488
Number of Sequences: 438
Number of extensions: 4473
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)