Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3l18
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    27   1.9  
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    27   1.9  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   4.4  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    26   5.8  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    26   5.8  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    26   5.8  

>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 374 STLLKFQLLYTLF-IWANEVTKKIIKENIRTYLSQISQCISEVVEALNKPATIYKY 538
           S LL  +L +T   +W N +  +II E       Q    +  + E +++PA I++Y
Sbjct: 77  SNLLGLKLDHTARPLWINPIDGRIILEAFSPLAEQAIDFLVTISEPVSRPAFIHEY 132


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 361 LKRTFNSSKVSVIVHLVYLGK*SYQKNHKRKYKNI-FVPDIP 483
           L +TFN+S++S I+  VY+G+ +   +  +K   + + P +P
Sbjct: 390 LDKTFNASEMSYIIEEVYVGRSALPPHESQKVTVVRWNPQLP 431


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 522 AGLFRASTTSDIHWDIWDKY 463
           A LFR ST    HW  W++Y
Sbjct: 877 AVLFRYSTDFQSHWSDWEEY 896


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +2

Query: 329 LHPLTKTTKSH*KGLSTLLKFQLLYTLF---IWANEVTKKIIKENIRTYLSQISQCISEV 499
           LH +TK      + L  L  FQLLY+L    ++A +     + E+I    S++    S+ 
Sbjct: 547 LHKVTKKIDKKAQHLQQLNAFQLLYSLVLLQVYAGDTDSIDVLEDIDNCYSKVFNKKSKR 606

Query: 500 VEALNKPATI 529
               N+P  +
Sbjct: 607 ESTSNEPTAM 616


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 169 KILLKEADATDQDEMRRQAYE 231
           +I LKE ++T QDE  R+A E
Sbjct: 229 EIALKEKESTSQDESNREAEE 249


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 511 EQTSNYI*IFKIPAECSRMAKV 576
           E+  +Y+  FK+ AECS ++K+
Sbjct: 601 EKLKSYLNSFKVQAECSEISKI 622


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,604
Number of Sequences: 5004
Number of extensions: 45997
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)