Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3l18
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80437-10|AAN84839.1|  656|Caenorhabditis elegans Hypothetical p...    28   7.1  
U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>U80437-10|AAN84839.1|  656|Caenorhabditis elegans Hypothetical
           protein C43E11.11 protein.
          Length = 656

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 446 KENIRTYLSQISQCISEVVEALNK 517
           K +++ YL ++++C S V E+LN+
Sbjct: 16  KTDVKDYLKKVAECDSSVAESLNR 39


>U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical
           protein T13H2.5b protein.
          Length = 1092

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 430 YQKNHKRKYKNIFVPDIP 483
           ++K   RK KNIFVP+IP
Sbjct: 288 HKKRETRKKKNIFVPNIP 305


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
            T13H2.5a protein.
          Length = 2471

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 430  YQKNHKRKYKNIFVPDIP 483
            ++K   RK KNIFVP+IP
Sbjct: 1667 HKKRETRKKKNIFVPNIP 1684


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,457,865
Number of Sequences: 27780
Number of extensions: 256684
Number of successful extensions: 525
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)