Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3l18
(683 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 2.1
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 23 2.1
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 2.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.7
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 4.7
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 22 6.3
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 22 6.3
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.4 bits (48), Expect = 2.1
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 419 ANEVTK--KIIKENIRTYLSQISQCISEVVE 505
+ EV K KII+E IRT L + Q S++ E
Sbjct: 436 SEEVLKEAKIIQEEIRTLLDESIQRKSDITE 466
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 23.4 bits (48), Expect = 2.1
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 419 ANEVTK--KIIKENIRTYLSQISQCISEVVE 505
+ EV K KII+E IRT L + Q S++ E
Sbjct: 142 SEEVLKEAKIIQEEIRTLLDESIQRKSDITE 172
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.0 bits (47), Expect = 2.7
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = -3
Query: 360 WLLVVFVKGCNSHPN 316
W+++V + GC+ +P+
Sbjct: 10 WIVLVLISGCSGNPD 24
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 534 LYIVAGLFRASTTSDIHWDIWD 469
LY+ G+F+++ DI W +D
Sbjct: 100 LYVPPGIFKSTCKMDIAWFPFD 121
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.7
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = -3
Query: 534 LYIVAGLFRASTTSDIHWDIWD 469
LY+ G+F+++ D+ W +D
Sbjct: 100 LYVPPGIFKSTCKMDVAWFPFD 121
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 534 LYIVAGLFRASTTSDIHWDIWD 469
LY+ G+F+++ DI W +D
Sbjct: 100 LYVPPGIFKSTCKIDIAWFPFD 121
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 534 LYIVAGLFRASTTSDIHWDIWD 469
LY+ G+F+++ DI W +D
Sbjct: 100 LYVPPGIFKSTCKIDITWFPFD 121
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 534 LYIVAGLFRASTTSDIHWDIWD 469
LY+ G+F+++ DI W +D
Sbjct: 100 LYVPPGIFKSTCKIDITWFPFD 121
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 4.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 534 LYIVAGLFRASTTSDIHWDIWD 469
LY+ G+F+++ DI W +D
Sbjct: 168 LYVPPGIFKSTCKIDITWFPFD 189
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 4.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 534 LYIVAGLFRASTTSDIHWDIWD 469
LY+ G+F+++ DI W +D
Sbjct: 168 LYVPPGIFKSTCKIDITWFPFD 189
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 4.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 534 LYIVAGLFRASTTSDIHWDIWD 469
LY+ G+F+++ DI W +D
Sbjct: 137 LYVPPGIFKSTCKIDITWFPFD 158
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 6.3
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = +1
Query: 427 SYQKNHKRKYKN--IFVPDIPV 486
+Y N+K+ YKN I + IPV
Sbjct: 108 NYNNNYKKLYKNYIINIEQIPV 129
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 6.3
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = +1
Query: 427 SYQKNHKRKYKN--IFVPDIPV 486
+Y N+K+ YKN I + IPV
Sbjct: 108 NYNNNYKKLYKNYIINIEQIPV 129
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,240
Number of Sequences: 438
Number of extensions: 3057
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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