Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3l16
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1133 - 10550799-10551137,10552195-10552254,10555693-105574...    29   3.4  
03_02_0790 - 11212540-11212698,11212777-11212873,11212974-112130...    29   3.4  
05_04_0317 + 20157849-20158364,20158465-20158628,20159471-201595...    28   7.9  

>07_01_1133 -
           10550799-10551137,10552195-10552254,10555693-10557401,
           10557534-10557616,10577533-10578074
          Length = 910

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 351 EDSAAIVRAKSCLAASRQETVARKAARDL 437
           E+   I++ +SC+A SRQ++ A    RDL
Sbjct: 651 EEKVKIIQERSCIAQSRQKSYADNRHRDL 679


>03_02_0790 -
           11212540-11212698,11212777-11212873,11212974-11213030,
           11213291-11213379,11213463-11213549,11213820-11213935,
           11214026-11214281,11214361-11214510,11214948-11215106,
           11215456-11215493,11215972-11216063,11216528-11216682,
           11217185-11217253
          Length = 507

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 168 NISQTTTQYNRVVCLFIFKLCEIFKAITSFHCSQWSDEFRKKNIIIL 28
           +I   +  Y+R + LF++ L  I  A+TSF   Q    F  K+I+ L
Sbjct: 112 SIDVESNNYSRDMFLFLYFLLIIVAAMTSFKVHQDKSSFTGKSILYL 158


>05_04_0317 +
           20157849-20158364,20158465-20158628,20159471-20159522,
           20159618-20159845,20159928-20160464
          Length = 498

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 409 VSCLLAARQDLARTIAALSSSMTPLRIHVERCSSSCTLPHLIFHTTKSLLSK 254
           V+CL        RT  A  +++  LR H+ RC+SS    HL+    + LL +
Sbjct: 122 VACLAHCSGADVRTFRAAQATLADLRRHLLRCASSQDC-HLVASYHRKLLGQ 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,304,112
Number of Sequences: 37544
Number of extensions: 307197
Number of successful extensions: 698
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)