Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3l09
         (221 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   1.8  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    24   3.1  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        23   7.2  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    22   9.5  

>SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 202 LVLLMFIDYDIYILIVFLVFSV 137
           + L  F+ YD+ IL + L+FS+
Sbjct: 1   MALHYFLQYDVQILCIALMFSI 22


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 187  FIDYDIYILIVFLVFSVCEGSLGLXILVSIIRSHGNDYFQRF 62
            +IDY I  L+  L F+   GS  L  ++ +  +   +Y+++F
Sbjct: 1711 YIDYPISELLQMLGFTASIGSSELSQVILMTVTTKKEYYKKF 1752


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 163 LIVFLVFSVCEGSLGLXILVSII 95
           +  FLVFS CE  +G  +   +I
Sbjct: 1   MFFFLVFSACEVFVGFSLCTLVI 23


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 127 SLGLXILVSIIRSHGNDYFQRFRI 56
           SLG  IL  IIR  GN  + + ++
Sbjct: 524 SLGALILFDIIRYQGNIKYSKLQL 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 352,606
Number of Sequences: 5004
Number of extensions: 3153
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)