Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3l05
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    27   3.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.1  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    26   5.4  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.1  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   9.4  

>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 369 AFSFLQNVRQTMELRKHDCRSPTLLRKFPSESLFVG 476
           A  FLQ++ +T+EL+K      + +  FP +S F+G
Sbjct: 131 AQEFLQHLVETLELQKPHTYKWSKVLSFPVDSPFIG 166


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +3

Query: 441 LRKFPSESLFVGGNTKINSATGSKDYHIIY*QSYFYE*MKVYKNYK*NELYLHLLHC 611
           LR   S  + +GG       T  K +  +  Q  F+E  K +  ++  ++YL    C
Sbjct: 512 LRTCKSRCIEIGGEQFSGFLTNIKPFEAVTFQKLFFEVGKGFSYFRPEQVYLETFFC 568


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 129 TXXYRPIRRPERQLLLRRISDCDAXSWKSAPTFSNTKSGRXMXSR 263
           T  + P   P+RQ   +  S  D  S + + +F N ++G+   SR
Sbjct: 211 TDNFIPFLTPKRQAYGQSSSRADRSSVRRSQSFKNRRNGKPRISR 255


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 104  LIPTNMRMQMSQKYTLKEPILCSFSMLNE 18
            LI + M +  S+KYT   P++ +++ L+E
Sbjct: 1192 LITSRMSVDFSEKYTQLIPVITTYTHLSE 1220


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +1

Query: 22  FNIENEHKMGSLRVY--FCDICILMLVGINYFLL 117
           F I++E ++GS+ +    C + +L L+G  +FL+
Sbjct: 243 FAIKSEGELGSVFLISLICSVLVLCLLGYEFFLV 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,285,880
Number of Sequences: 5004
Number of extensions: 40116
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)