Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3l05
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0144 - 7153464-7153822,7153933-7154837,7155962-7156224           28   5.6  
04_01_0255 - 3395548-3396129,3396203-3397834                           28   7.4  

>02_02_0144 - 7153464-7153822,7153933-7154837,7155962-7156224
          Length = 508

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 144 PIRRPERQLLLRRISDCDAXSWKSAPTF 227
           P RRP  Q +LRR+  C A  W+  P F
Sbjct: 481 PQRRPSMQTVLRRLRQC-ARWWRRFPCF 507


>04_01_0255 - 3395548-3396129,3396203-3397834
          Length = 737

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 216 APTFSNTKSGRXMXSRRRQXMXDTLQCISNSYESKRP 326
           A  +S  +S R     R++ + D L+C+ N    KRP
Sbjct: 557 AKIWSKKESSRCSSRSRQKCLADILRCMENKRREKRP 593


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,060,556
Number of Sequences: 37544
Number of extensions: 241231
Number of successful extensions: 540
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)