Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3l02
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.12 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.35 
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    29   0.47 
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    27   3.3  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    27   3.3  
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    27   3.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.8  
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|...    26   5.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   5.8  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   7.6  
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    25   7.6  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +3

Query: 201  PFPKPIVGKPCEPPTPSGAPPAQRAPVA 284
            P PKP V  P   P PSGAPP  +  VA
Sbjct: 1122 PVPKPSVAAP-PVPVPSGAPPVPKPSVA 1148



 Score = 31.5 bits (68), Expect = 0.12
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +3

Query: 201  PFPKPIVGKPCEPPTPSGAPPAQRAPVA 284
            P PKP V  P   P PSGAPP  +  VA
Sbjct: 1141 PVPKPSVAAP-PVPAPSGAPPVPKPSVA 1167



 Score = 31.1 bits (67), Expect = 0.15
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +3

Query: 201  PFPKPIVGKPCEPPTPSGAPPAQRAPVA 284
            P PKP V  P   P PSGAPP  +  VA
Sbjct: 1103 PVPKPSVAVP-PVPAPSGAPPVPKPSVA 1129



 Score = 29.5 bits (63), Expect = 0.47
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +3

Query: 201  PFPKPIVGKPCEPPTPSGAPPAQRAPV 281
            P PKP  G P  PP PS APP  +  V
Sbjct: 1180 PVPKPAAGVPPVPP-PSEAPPVPKPSV 1205



 Score = 29.5 bits (63), Expect = 0.47
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = +3

Query: 201  PFPKPIVGKPCEPPTPSGAPP 263
            P PKP VG P  PP PS APP
Sbjct: 1199 PVPKPSVGVPPVPP-PSTAPP 1218



 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 201  PFPKPIVGKPCEPPTPSGAPPAQR 272
            P PKP V  P  P   SG PP  +
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPK 1183



 Score = 22.2 bits (45), Expect(2) = 5.1
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 201  PFPKPIVGKPCEPPTPSGAPP 263
            P P P    P   P PSGAPP
Sbjct: 1065 PVPAPSSEIP-SIPAPSGAPP 1084



 Score = 21.8 bits (44), Expect(2) = 5.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 240  PTPSGAPPAQRAPVA 284
            P PSG PP  +  VA
Sbjct: 1086 PAPSGIPPVPKPSVA 1100


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
 Frame = +3

Query: 201 PFPKPIVGKPCEPPTP---SGAPPAQRAPVAPYCHCDAHSY---SPRVEQYKQL----LE 350
           P P PI+G P  PP P   +GA P    P  P        Y   +P+ E   ++    L 
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPKIDETSLT 811

Query: 351 KEQKLCQDYEQLRKQ 395
           +EQK+    E+ RKQ
Sbjct: 812 EEQKI--QLEEARKQ 824


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 261 PAQRAP-VAPYCHCDAHSYSPRVEQYKQLLEKEQKLCQDYEQLRKQMVSVTNDILDHPCD 437
           P +R P V   CH D H+ S     ++  +EKE  +  D  ++RK   +  +D  +H  D
Sbjct: 143 PRKRGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSEVRKFCYNCASD--EHFGD 200

Query: 438 D 440
           D
Sbjct: 201 D 201


>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 255 APPAQRAPVAPYCHCDAHSYSPRVEQYK 338
           AP A    +  Y H   H Y PR+E+ K
Sbjct: 99  APEAHEKALTFYHHLKLHPYGPRMEEMK 126


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +3

Query: 498 VADYRTIMASSQSSAPI 548
           VA+YRT++ S QS+AP+
Sbjct: 138 VAEYRTLLNSMQSNAPV 154


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +1

Query: 13 NLSSLFEEIFIQFKFLASKVILNYVGCQI 99
          N S+LFE+IFIQ  FL    +   VGC+I
Sbjct: 8  NWSALFEKIFIQKSFLGFCSL--RVGCEI 34


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +3

Query: 213  PIVGKPCEPPTPSGAPPAQRAPVAP 287
            P +  P  PP P   PP   AP  P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMP 1724


>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 273 APVAPYCHCDAHSYSPRVEQYKQLLEKEQKLCQDYEQLRKQMVSVT 410
           A + P C  +  S   R  QY + L++ +++C++   L K +   T
Sbjct: 112 ANIVPGCEKNKGSILQRTAQYIRSLKEMEEMCREKSNLEKLVADHT 157


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +3

Query: 207  PKPIVGKPCEPPTPSG--APPAQRAPVAPYCHCDAHSYSP 320
            P P VG+   PPT SG   PP Q+ P  P  +      SP
Sbjct: 927  PPPKVGETYHPPTASGTRVPPVQQ-PSHPNPYTPVAPQSP 965



 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 594  PTHFSENPPKVRPSIHPPAPIHTGVTP 674
            P   S  PPKV  + HPP    T V P
Sbjct: 921  PAIASPPPPKVGETYHPPTASGTRVPP 947


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 25/99 (25%), Positives = 34/99 (34%), Gaps = 3/99 (3%)
 Frame = +3

Query: 384 LRKQMVSVTNDILDHPCDDLDSKMTTMYQATYKKRSFPV-ADYRTI--MASSQSSAPIPV 554
           + K +V    D  D+  DD   +  T    T      PV A +        SQ + P P 
Sbjct: 184 ISKPVVQAQKDSKDNSWDDSSKQSNTQTANTTSNLRVPVNASWSDAGRKEKSQENKPKPT 243

Query: 555 ESNRLGLLRCYKDPTHFSENPPKVRPSIHPPAPIHTGVT 671
                G  +     +H       V+PS HP   I T  T
Sbjct: 244 PFGSGGPSKPTPFESHGPAKQISVQPSEHPKPSISTTTT 282


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 429 PCDDLDSKMTTMYQATYKKRSFPVADYRTIMASSQ 533
           P ++ DS+ T    ATY K  FPVA  + IM + Q
Sbjct: 4   PTNNNDSE-TKPNPATYWKSRFPVARIKKIMQADQ 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,948
Number of Sequences: 5004
Number of extensions: 46857
Number of successful extensions: 212
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)