Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3k24
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 33 0.028
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 29 0.46
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 26 4.3
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 26 5.6
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe... 25 7.5
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 25 7.5
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 25 7.5
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.9
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 33.5 bits (73), Expect = 0.028
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Frame = +3
Query: 354 VERPHHHYKPMGTGSFTGDSQLLHDAKHLEEDSKVLTPAMLASMTPEELEFHYFSIHDFD 533
+E P HH + D +L + K+ + +K T +M EE E H S +
Sbjct: 27 IEEPEHHDNSNKESTNLDDLNMLEEPKYHDNSNKESTNLDDLNML-EEPEHHDNSKKE-- 83
Query: 534 RNTKLDGSEMLKAVYH--TLDHESPNPDD-DSSIEPEAND 644
+T LD S ML+ H + ES N DD + S EP+ +D
Sbjct: 84 -STNLDDSNMLEEPKHHDNSNKESTNLDDLNMSEEPKHHD 122
Score = 29.5 bits (63), Expect = 0.46
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +3
Query: 354 VERPHHHYKPMGTGSFTGDSQLLHDAKHLEEDSKVLTPAMLASMTPEELEFHYFSIHDFD 533
+E P HH + DS +L + KH + +K T +M+ EE + H S +
Sbjct: 71 LEEPEHHDNSKKESTNLDDSNMLEEPKHHDNSNKESTNLDDLNMS-EEPKHHDSSNKE-- 127
Query: 534 RNTKLDGSEMLKAV-YHTLDHESPNPDDD 617
+T LD S M ++ E P P D
Sbjct: 128 -STNLDNSNMDESENQKNFKIEEPKPSGD 155
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 29.5 bits (63), Expect = 0.46
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 519 IHDFDRNTKLDGSEMLKAVYHTLDHESPNPDDDSSIEPE 635
+HD+D+N+ ++ ++L+ HT E N D + + E
Sbjct: 129 VHDYDKNSPIENEKILEDDQHTAMKEKDNESDKTMKDVE 167
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 411 SQLLHDAKHLEEDSKVLTPAMLASMTPEE-LEFHYFSIHDFDRNTKLDGSEMLKAVYHTL 587
SQ++ ED K L + + E ++ ++ + D L+G ++ +Y +
Sbjct: 233 SQMVVSVYDKYEDDKFLGSVKITPIFLHEYVQEAWYKLEPLDLTKSLEGEIKVETIYEHI 292
Query: 588 DHESPNPDDDSSI 626
+H P+D +++
Sbjct: 293 EHVRYGPEDFTAL 305
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 350 RLPRRMMWTSTERKNTINHQ*KICGNQTLSP 258
R RR +W S ++ N + KI G+ +LSP
Sbjct: 203 RTRRRSIWLSRHGESQFNVEGKIGGDSSLSP 233
>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.5
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Frame = +1
Query: 229 LVAKAEISRIGLKVWLPHIFY**LMV-----FLRSVEVHIIRRGRRRWNVLTIITN---Q 384
L A I+ +GL VW H+F L V F + V I G + ++ L +T Q
Sbjct: 280 LWAMLSIALLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQ 339
Query: 385 WGQVPLL 405
W +VP+L
Sbjct: 340 WSRVPML 346
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +3
Query: 513 FSIHDFDRNTKLDGSEMLK---AVYHTLDHESPNPDDDSSIEPEANDL 647
F ++D D N + EML+ A+Y + P+D+ + E N +
Sbjct: 105 FQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKI 152
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 306 VFALRRGPHHPPGQTPVERPHHHYKPMGTGSFTGDSQLLHDAKHLEEDSK 455
V+A+R G P+E H + TG F D + ++ K LE + K
Sbjct: 40 VYAVRWAAEMLNGMNPIEMEHIPFSSTPTGEFDLDPDMANE-KLLEVEEK 88
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 25 HFLDFIFLCIFVFDICTLYDSSQFL 99
HFL F FLC+ VF + L+ S L
Sbjct: 154 HFLFFFFLCVCVF-LSFLFSLSHLL 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,446
Number of Sequences: 5004
Number of extensions: 53219
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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