Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3k24
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0837 - 20925345-20926178                                         30   1.5  
12_02_1234 - 27227262-27227647,27227715-27227781                       29   4.4  
08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983     29   4.4  
07_03_1392 - 26238885-26239007,26239137-26239235,26239636-262397...    29   4.4  
08_02_0197 - 14150787-14151440                                         28   5.9  
05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103...    28   5.9  
07_01_0438 + 3328992-3329519                                           28   7.7  
02_03_0262 + 17015383-17015619,17017932-17018879                       28   7.7  

>10_08_0837 - 20925345-20926178
          Length = 277

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 327 PHHPPGQTPVERPHHHY 377
           P HP   +P  RPHHHY
Sbjct: 24  PLHPTPTSPTARPHHHY 40


>12_02_1234 - 27227262-27227647,27227715-27227781
          Length = 150

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 516 SIHDFDRNTKLDGSEMLKAVYHTLDHESPNPDDDSS--IEPEANDLDS 653
           S+ D D N+  + S ML   +   D ESP+    SS    PE N LD+
Sbjct: 2   SVLDLDINSDDESSSMLGVGHREKDDESPSTSGKSSPPPPPEQNPLDA 49


>08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983
          Length = 145

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 303 GVFALRRGPHHPPGQTPVERPHHHYKPMGTGS 398
           G F   + P++PP   P +  HHH    G+G+
Sbjct: 92  GYFNQGQQPYYPPPPLPYDHCHHHCGDEGSGA 123


>07_03_1392 -
           26238885-26239007,26239137-26239235,26239636-26239720,
           26239825-26240028,26240360-26240682,26241904-26242575
          Length = 501

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 513 FSIHDFDRNTKLDGSEMLKAVYHTLDHESPNPDDDSSIEPEANDLD 650
           F +    +++K    +  +   HT   E PNP    +IEP+  D D
Sbjct: 10  FLLFSKPKSSKKKPKQEAEPQVHTQPEEPPNPSPSPAIEPDLRDSD 55


>08_02_0197 - 14150787-14151440
          Length = 217

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +3

Query: 315 LRRGPHHPPGQTPVERPHHHYKPMGTGSFTGDSQLLHDAKHLEEDSKVLTPAMLASMTP 491
           L + P  PP   P    HH +KP+ T   +  S LL      ++D  + T       TP
Sbjct: 18  LSKNPRTPP-PPPAMHHHHAHKPLITALTSTSSFLLRSVDVSKDDKPLETATTTTPPTP 75


>05_03_0389 -
           13409848-13409964,13410049-13410114,13410209-13410325,
           13410822-13410893,13410979-13411258,13411528-13411730,
           13412230-13412316,13412705-13412758,13413042-13413221,
           13414402-13414576,13414628-13414918,13414923-13415344
          Length = 687

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 23/69 (33%), Positives = 28/69 (40%)
 Frame = +3

Query: 300 NGVFALRRGPHHPPGQTPVERPHHHYKPMGTGSFTGDSQLLHDAKHLEEDSKVLTPAMLA 479
           N VFAL  G   PP    + R   HY P   G      ++L D     ED    TPA  A
Sbjct: 571 NYVFALLTGYRDPPAGVQI-REGLHYNPYFPGGAIAMPKMLIDGAVEYEDG---TPATEA 626

Query: 480 SMTPEELEF 506
            M  + + F
Sbjct: 627 QMGKDVVSF 635


>07_01_0438 + 3328992-3329519
          Length = 175

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 25/65 (38%), Positives = 32/65 (49%)
 Frame = -3

Query: 387 PLVCNDGEDVPPASAPADDVDLDGAQKHH*SSVKDMW*PNFESNPAYFCLSN*TSHHSLN 208
           PLV   G+   PA APA D D   A  H  S   D     F  +P+ F LS  T+ H+L 
Sbjct: 117 PLVLTLGQQRQPAPAPAIDGDHPAAPPH--SPPADA----FLLSPSSFFLSP-TTMHALQ 169

Query: 207 DLSYL 193
           +L+ L
Sbjct: 170 ELAAL 174


>02_03_0262 + 17015383-17015619,17017932-17018879
          Length = 394

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 543 KLDGSEMLKAVYHTLDHESPNPDDDSSIE 629
           K+DG ++   VY++ D+ S    DD S E
Sbjct: 323 KMDGKKLYDGVYNSSDYSSDTASDDESDE 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,405,478
Number of Sequences: 37544
Number of extensions: 330727
Number of successful extensions: 1020
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)