Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3k24
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      26   0.28 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.0  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 13/55 (23%), Positives = 23/55 (41%)
 Frame = -3

Query: 228 TSHHSLNDLSYLLASANYFPFRPPTYQPFKXXXXXXLPITTTNKKLR*IIKSANI 64
           T    L+ +  L A  N+ PF     + F        P+T T   ++ +++ A I
Sbjct: 122 TDRDELSHVRALAAGGNHLPFHEKLVESFPRGGSLPTPVTPTPTTVQQLLRRAQI 176


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 462 TPAM--LASMTPEELEFHYFSIHDFDRNTKLDGSEMLKAVYHTLDHE 596
           TP M  L ++    L  +  S+HDF R+  L G++    +   LD E
Sbjct: 324 TPVMPDLNALIATGLYINDLSMHDFSRDLMLAGTQQSVELKLALDQE 370


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 627 LLKNRHLDSDFHGLKCDR 574
           +L+N  +DS    LKCD+
Sbjct: 135 ILRNDRIDSYKSNLKCDK 152


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -3

Query: 519 LKNNETPILRVS 484
           LK+N+TP++R S
Sbjct: 679 LKHNDTPVVRAS 690


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,722
Number of Sequences: 438
Number of extensions: 3644
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)