Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3k21
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875           28   3.1  
07_03_1697 - 28795521-28797328,28797430-28797550                       27   7.2  
04_04_0895 - 29168107-29168229,29168617-29170068                       27   7.2  
03_02_0811 + 11437654-11438958                                         26   9.5  
03_02_0809 + 11419318-11420493                                         26   9.5  

>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
          Length = 356

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 292 SSCSTCKW*CTESRGRSMGRSKNRR 218
           +SC  CK  C  S GRS  R++ RR
Sbjct: 252 TSCIFCKSFCRSSGGRSRARARERR 276


>07_03_1697 - 28795521-28797328,28797430-28797550
          Length = 642

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 177 TYRGYRRPGCSCILTYSYRD 118
           T R  R   CS +L+YSYRD
Sbjct: 451 TVRKLRCGSCSAVLSYSYRD 470


>04_04_0895 - 29168107-29168229,29168617-29170068
          Length = 524

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 358 IALNTDGCHRRHPRRYVSEFNISSC 284
           +A   DGC RR+P  Y S+  I +C
Sbjct: 254 LARMQDGCIRRYPALYGSDDRIQAC 278


>03_02_0811 + 11437654-11438958
          Length = 434

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 156 PGCSCILTYSYRDRS-KG*YLKVSKFS 79
           P  +C+ TYSY D+S    +L+V KF+
Sbjct: 157 PNQTCVYTYSYGDKSVTTGFLEVDKFT 183


>03_02_0809 + 11419318-11420493
          Length = 391

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 156 PGCSCILTYSYRDRS-KG*YLKVSKFS 79
           P  +C+ TYSY D+S    +L+V KF+
Sbjct: 110 PNQTCVYTYSYGDKSVTTGFLEVDKFT 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,848,029
Number of Sequences: 37544
Number of extensions: 115883
Number of successful extensions: 223
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)