Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3k19
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    31   0.17 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.2  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    28   1.6  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   2.1  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    27   3.7  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   4.9  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    26   6.5  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    25   8.6  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   8.6  

>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -1

Query: 606 ISLPSAVGINVGCSSAVKYSRRRLTLGLATDRCLLDAAHSDNSRIWLVLL 457
           I L +A+    GC+S +K     L +G  ++ CLL    S +S I L LL
Sbjct: 341 IDLEAALIFQFGCNSTIKVPISLLVIGQVSNICLLGIRPSTDSEIVLGLL 390


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 395 SPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFSGIFGFRHPTAAMKYFPSLISH 234
           S F+STT  +++    +ST SSS  +  S+  S       P ++  +  SL SH
Sbjct: 353 SSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSH 406


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 702 FVLSNSGYTVERFRRGLSCI 643
           FV++N GYT+ER   GL  +
Sbjct: 474 FVINNKGYTIERLIHGLHAV 493


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 190 PWQEWSDHYTCHRYRCEIRDG 252
           P+Q+W D+Y C  Y   +R G
Sbjct: 478 PYQKWVDNYFCEDYLSAVRRG 498


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 702 FVLSNSGYTVERFRRGL 652
           F+++N GYT+ER   GL
Sbjct: 473 FIINNDGYTIERLIHGL 489


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 440 SGNSSPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFS 297
           S +SSP      T  SP +S++  + +    +S+ SSS  S  SS+ S
Sbjct: 139 SSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 186


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
 Frame = +1

Query: 385 VNGERIVQTRGQPGEL--FPDKPWKGQQNEPNPAVVGMSGIQQTPVGGEPQGQASPGIFN 558
           VNG  +    G  G +  +P  P +     P P   GM+     P  G P     PG   
Sbjct: 495 VNGRGMPMVPGHNGPMPMYPGMPTQFPAGGPAPGYPGMNARGPVPAQGRP--MMMPGSVP 552

Query: 559 SRGAA 573
           S G A
Sbjct: 553 SAGPA 557


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = -1

Query: 360 TARGEFDILIFDVFVAFQCVFRYFWFSTSDSSYEVFPVS 244
           T +GE      D+ +  + V++ +W  +  ++  +FPV+
Sbjct: 229 TEQGELSFKKGDIILVLESVYKDWWKGSCKNAVGIFPVN 267


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 274  GCRKPKIPENALECHEYIEDEN 339
            G  K  IP+N  EC E + DE+
Sbjct: 1567 GRSKVTIPQNMFECKELVADEH 1588


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,257,521
Number of Sequences: 5004
Number of extensions: 70653
Number of successful extensions: 220
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)