Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3k18
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   1.3  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    25   3.1  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    25   5.4  
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    24   9.4  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    24   9.4  

>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 297 LPDIPWLAYRLDIPNASGTAKMLHAGAYRSLS 202
           LPD+    + L++P  S T ++LH G Y   S
Sbjct: 692 LPDLEDEEFDLEVPYTSPTFQLLHFGEYMERS 723


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 297 LPDIPWLAYRLDIPNASGTAKMLHAGAYRSLSQLFLLH 184
           LP +P+LA   D P   GT++     +   + +LF  H
Sbjct: 9   LPSLPFLACISDFPENHGTSRRSATVSLERVHELFTEH 46


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 177 RSDATKIIERDFDMHPH 227
           +SD ++IIE +  MHPH
Sbjct: 309 QSDTSEIIENEPGMHPH 325


>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 279 LAYRLDIPNASGTAKMLHA 223
           L Y   IPNA GT  +LHA
Sbjct: 73  LWYPQTIPNACGTIGLLHA 91


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 138 LPVSTNILYIYTPRSDATKIIERDFDM 218
           +P  +  L IYT +  + KI++R FD+
Sbjct: 1   MPTISPTLGIYTRKFASQKILQRQFDV 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,561,704
Number of Sequences: 5004
Number of extensions: 30438
Number of successful extensions: 54
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)