Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3k11
         (273 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    78   2e-16
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo...    26   0.83 
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    24   3.4  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    24   3.4  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    24   3.4  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    23   5.9  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 78.2 bits (184), Expect = 2e-16
 Identities = 38/88 (43%), Positives = 54/88 (61%)
 Frame = +3

Query: 9   AHRGRSVHLAIFSLHLAGISSXIGAINFITTIVXIRLNXXSFDQLPLFV*AVGITAFXXX 188
           +H G ++ LAI SL L GISS +G++N I T++ +R    S  Q+PLF  A+ IT+    
Sbjct: 144 SHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLL 203

Query: 189 XXXXXXAGAITILLTDRNLNTSFFDPAG 272
                 AG + +L +DRNLNTSF+ P G
Sbjct: 204 LTLPVLAGGLFMLFSDRNLNTSFYAPEG 231


>SPAC1B3.07c |vps28||ESCRT I complex subunit
           Vps28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 0.83
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query: 57  AGISSXIGAI--NFITTIVXIRLNXXSFDQL 143
           A I+  I  +  NFITT+  IRLN  + DQL
Sbjct: 151 ASIAKSIAGLVQNFITTLDAIRLNFIAKDQL 181


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 241 FRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDXXF 119
           + S+N     P  +    NN N+   T HT+ G+ SN   F
Sbjct: 125 YASLNTTPHFPQVSNHAPNNSNSPSLTWHTSSGDDSNQNPF 165


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 265 GSKNDVFKFRSVNNIVIA 212
           GS +D+FK  S+NN ++A
Sbjct: 624 GSFSDIFKRNSINNALLA 641


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 3   NIAHRGRSVHLAIFSLHLAGISSXIGAINF 92
           NI + GRS  + +  L +AGIS    A+++
Sbjct: 112 NIYYMGRSSVINVGGLRIAGISGIYSAMDY 141


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 250 VFKFRSVNNIVIAPAKTGSDNNNKNAVIP 164
           +FKF+++ N   A     S NNN +++ P
Sbjct: 630 IFKFQALQNNADATLILNSYNNNSSSLSP 658


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 815,876
Number of Sequences: 5004
Number of extensions: 10695
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)