Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3k11
         (273 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1012 - 25281820-25281987,25282337-25282409,25283370-252834...    25   6.3  
07_03_1393 - 26245105-26246862                                         25   6.3  
11_08_0088 + 28283124-28283330,28285639-28286322                       25   8.3  

>12_02_1012 -
           25281820-25281987,25282337-25282409,25283370-25283420,
           25283523-25283932,25284083-25284413,25285340-25285439,
           25287091-25287370
          Length = 470

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 220 VIAPAKTGSDNNNKNA 173
           +I P K  SDN NKNA
Sbjct: 204 IIPPVKKDSDNTNKNA 219


>07_03_1393 - 26245105-26246862
          Length = 585

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -3

Query: 256 NDVFKFRSVNNIVIAPAKTGSDNNNKNAVIP 164
           N V KFRS  N    P + GS N N     P
Sbjct: 225 NRVGKFRSGTNAARPPRQKGSKNRNPRVAPP 255


>11_08_0088 + 28283124-28283330,28285639-28286322
          Length = 296

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -3

Query: 241 FRSVNNIVIAPAKTGSDNNN--KNAVIPTAHTNKG 143
           + S N  VIA A T  D NN      +PT HT +G
Sbjct: 71  YNSSNQKVIANANTNRDTNNLAMQTQVPT-HTREG 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,677,537
Number of Sequences: 37544
Number of extensions: 54886
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)