Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3k11
         (273 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003137-2|AAB93641.2|  464|Caenorhabditis elegans Temporarily a...    25   5.5  
Z70781-2|CAA94832.1|  396|Caenorhabditis elegans Hypothetical pr...    25   7.3  
L16559-6|AAA27931.1|  397|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AL132841-2|CAB60332.1|  469|Caenorhabditis elegans Hypothetical ...    25   9.7  

>AF003137-2|AAB93641.2|  464|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 146 protein.
          Length = 464

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = -3

Query: 196 SDNNNKNAVIPTAHTNKGN*SNDXXFNRIXTIVVIKLIAPIXDEIPAKCSEK 41
           S+   K ++ P+    +    ++   + +   V+ +++API +EIP +  EK
Sbjct: 201 SNQTTKQSIYPSEKEMEKAAISNARIDDVINTVLARVLAPIDEEIPIEEPEK 252


>Z70781-2|CAA94832.1|  396|Caenorhabditis elegans Hypothetical
           protein F57A8.4 protein.
          Length = 396

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 53  FSRYFIXYRSD*FYYDNSXYT 115
           F  YFI YR D   Y+N  YT
Sbjct: 171 FFEYFITYRPDCPLYENYDYT 191


>L16559-6|AAA27931.1|  397|Caenorhabditis elegans Hypothetical
           protein C06E1.8 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 256 NDVFKFRSVNNIVIAPAKTGSD-NNNKNAVIPTAHTNK 146
           N  F  +S+ +I +  A   +D NNN N+VIP    N+
Sbjct: 113 NWAFPDKSLLHIHLQTATNNNDSNNNNNSVIPHGVINR 150


>AL132841-2|CAB60332.1|  469|Caenorhabditis elegans Hypothetical
          protein Y15E3A.4 protein.
          Length = 469

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 6  IAHRGRSVHLAIFSLHLAGISSXIGAINF 92
          +A R R + LAI +L +A I+S +  INF
Sbjct: 12 LADRQRYIILAIGTLCIAAIASNMTVINF 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,438,157
Number of Sequences: 27780
Number of extensions: 58496
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 227290938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)