Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3k11
         (273 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   1.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   3.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   6.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   6.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   6.4  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    20   6.4  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -3

Query: 235 SVNNIV--IAPAKTGSDNNNKNAVIPTAH 155
           +VNN++     AK+ + NNN+N     AH
Sbjct: 407 NVNNLIKNTRCAKSNNQNNNQNKYKNQAH 435


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 187 NNKNAVIPTAHTNKGN*SNDXXFN 116
           NN+NA    A+   GN  ND   N
Sbjct: 443 NNQNADNQNANKQNGNRQNDNRQN 466


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 67  EIPAKCSEKXARCTDLP 17
           E+PA  +EK   C D P
Sbjct: 214 EVPAVRNEKFYTCCDEP 230


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 67  EIPAKCSEKXARCTDLP 17
           E+PA  +EK   C D P
Sbjct: 214 EVPAVRNEKFYTCCDEP 230


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 67  EIPAKCSEKXARCTDLP 17
           E+PA  +EK   C D P
Sbjct: 210 EVPAVRNEKFYTCCDEP 226


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 235 SVNNIVIAPAKTGSDNNNKN 176
           +VN++++      SDN N N
Sbjct: 573 NVNDLIMNTRCANSDNQNNN 592


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,267
Number of Sequences: 438
Number of extensions: 804
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5263398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)