Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3k10
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024765-6|AAF60526.2|  254|Caenorhabditis elegans Smn (survival...    33   0.21 
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.    29   2.6  
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.    29   2.6  
U39851-2|AAF99874.1|  540|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain (pr...    28   5.9  
U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical p...    28   7.8  
AL132876-17|CAC48140.1|  934|Caenorhabditis elegans Hypothetical...    28   7.8  
AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical ...    28   7.8  
AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AC024765-6|AAF60526.2|  254|Caenorhabditis elegans Smn (survival of
           motor neuron)protein interactor protein 1, isoform a
           protein.
          Length = 254

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
 Frame = +2

Query: 302 DVQLKEVPTNGEEYLLKVIKER---KNIAAVTKCNKDY-SKFAENQSQYVH-----EFPR 454
           DV +     +  +YL ++  ER   KN+  + + + D  S  A+ Q Q++      E  +
Sbjct: 17  DVDMTSPAMSAAQYLRQMQAERRGTKNVVRIAQKSPDSTSPEAKKQKQWLESVGYQEVKK 76

Query: 455 LSVPEKLKPTIEWQNMQVADFSETRMYISRLLSK 556
           +  P  L P+ EW+  +   F ETR  ++  + K
Sbjct: 77  IETPSPLIPSEEWRQEKCRKFEETRAKMALKIEK 110


>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
           protein C12C8.3b protein.
          Length = 1143

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 714 ISVSTSKPWSSNACCNPSTHDNVGIWVLKNCFHSI 610
           I    S P SS+ C    THD+V I + +NC HS+
Sbjct: 462 IGSGESSPRSSSVC---GTHDSVIIGICENCPHSV 493


>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
           protein C12C8.3a protein.
          Length = 1147

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 714 ISVSTSKPWSSNACCNPSTHDNVGIWVLKNCFHSI 610
           I    S P SS+ C    THD+V I + +NC HS+
Sbjct: 466 IGSGESSPRSSSVC---GTHDSVIIGICENCPHSV 497


>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
          Length = 1147

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 714 ISVSTSKPWSSNACCNPSTHDNVGIWVLKNCFHSI 610
           I    S P SS+ C    THD+V I + +NC HS+
Sbjct: 466 IGSGESSPRSSSVC---GTHDSVIIGICENCPHSV 497


>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
          Length = 1143

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 714 ISVSTSKPWSSNACCNPSTHDNVGIWVLKNCFHSI 610
           I    S P SS+ C    THD+V I + +NC HS+
Sbjct: 462 IGSGESSPRSSSVC---GTHDSVIIGICENCPHSV 493


>U39851-2|AAF99874.1|  540|Caenorhabditis elegans Hypothetical
           protein C23G10.6 protein.
          Length = 540

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/78 (24%), Positives = 36/78 (46%)
 Frame = +2

Query: 188 ISQSCNLVKKMSLKKYLKTMKDDEDNLDIVSPCFKISPDVQLKEVPTNGEEYLLKVIKER 367
           IS +   +K   L  +   + D  +N  ++S        V+   +P + +  +LKVIK  
Sbjct: 281 ISVNMGKIKSQKLDDHWDVILDQRNNNMLIS----FGSMVKSSTMPIDWKMNILKVIKSE 336

Query: 368 KNIAAVTKCNKDYSKFAE 421
            N+  + K   + +KFA+
Sbjct: 337 PNVTFIWKYETNDTKFAD 354


>U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 7 protein.
          Length = 491

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/49 (30%), Positives = 31/49 (63%)
 Frame = +2

Query: 158 IYVL*IVNVIISQSCNLVKKMSLKKYLKTMKDDEDNLDIVSPCFKISPD 304
           I+ + IV+ + + S + + + S  K L T+ D E++L+++  C K++PD
Sbjct: 194 IHDMRIVSKLSTDSTDTMFETS--KLLYTVGDLEESLNVIRECLKLNPD 240


>U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical
           protein K06C4.8 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 571 FPYFPF*QQTRYVHSSF*EICYLHVLPLNC 482
           FP+FP   +   VH+ F   C ++  PL C
Sbjct: 81  FPFFPGYHEIGSVHTIFSAFCLIYFYPLMC 110


>AL132876-17|CAC48140.1|  934|Caenorhabditis elegans Hypothetical
           protein Y105E8A.21 protein.
          Length = 934

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/70 (24%), Positives = 29/70 (41%)
 Frame = +2

Query: 287 FKISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPRLSVP 466
           +K  PD   K      + Y L  + + K I     C+K+Y+    N    ++   R  V 
Sbjct: 188 YKNRPDDFRKLSKKAKQAYTLDAVTKNKGIVKCLVCDKEYT----NHMSIIYHIDRCQVD 243

Query: 467 EKLKPTIEWQ 496
           + L+P   W+
Sbjct: 244 KSLQPWKCWR 253


>AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical
           protein F14F9.3 protein.
          Length = 848

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = +2

Query: 338 EYLLKVIKERKNI-AAVTKCNKDY---SKFAENQSQYVHEFPRLSVPEKLKPTIEWQNMQ 505
           EYL K I +  +I  A++K   +     +  E  S     F R ++PE  K + EW+N  
Sbjct: 370 EYLQKKISKELSIHKAISKITTEMLTNKRIVETMSMASKFFGRKTLPEFFKDSNEWENQL 429

Query: 506 V 508
           V
Sbjct: 430 V 430


>AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical
           protein ZK973.2 protein.
          Length = 865

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 224 LKKYLKTMKDDEDNLDIVSPCFKISPDVQL 313
           +KK++KTM+D +   DI+  C ++   + L
Sbjct: 601 IKKHIKTMQDAQIKSDIIQTCERLHGQISL 630


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,585,337
Number of Sequences: 27780
Number of extensions: 318463
Number of successful extensions: 946
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)