Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3k08
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 1.7
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 27 1.7
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 27 2.3
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.3
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 26 5.3
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 26 5.3
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 7.0
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.0
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 7.0
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 25 9.2
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 197 PVSTTWTPCGPRGAGAGFSVTCAII 123
P S WT CG GA A F A++
Sbjct: 373 PASCRWTACGLAGAIASFITLAAVV 397
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1183
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 115 LNQMMAHVTEKPAPAPRGPHGVQVVDTGPDHTFTLDEEALKSLLLKE 255
++Q+ + EK P G +VV PD T+ +D E + L L E
Sbjct: 1050 IDQVALYDKEKRGYVTLFPSGSEVVQFVPDRTYNIDSEYVVYLSLHE 1096
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 608 TDDSIVDRANTVAQSRTVDSLSKAPCVSSNIIATFSPS 495
TDD T + R + +L+K+P + + IIA+ +PS
Sbjct: 458 TDDDFSLSRLTDDEEREIRALAKSPDIHNRIIASMAPS 495
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 5.3
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -2
Query: 584 ANTVAQSRTVDSLSKAPCVSSNIIATFS---PSSSVALNISDHMSMPVVSLSEPPRQLKP 414
A A R + L +P ++ AT S PSS V N++ S P+ + + +LKP
Sbjct: 182 AEHFAPQRNDEQLGNSPASITSKPATTSAAQPSSKVEENMAKATSQPITTAEKEIPELKP 241
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 202 DHTFTLDEEALKSLLLKEDV 261
DHT + + EALK+LL +D+
Sbjct: 701 DHTLSENPEALKALLFSKDI 720
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 539 APCVSSNIIATFSPSSSVALN 477
+P VSS I +F P +S+ALN
Sbjct: 143 SPRVSSTIAYSFKPKASIALN 163
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 175 GVQVVDTGPDHTFTLDEEALKSLLLKEDVRDRAVVV 282
GV +D G ++TL + L++LLL DVR V
Sbjct: 1202 GVSFIDLG---SYTLSAKCLRNLLLFGDVRQNVTFV 1234
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.4 bits (53), Expect = 7.0
Identities = 18/67 (26%), Positives = 27/67 (40%)
Frame = +1
Query: 154 PAPRGPHGVQVVDTGPDHTFTLDEEALKSLLLKEDVRDRAVVVISVAGAFRKGKSFLLDF 333
PAP PH V ++ F+ + S LL ED A + + + S ++D
Sbjct: 207 PAPDVPHDVYCIEPSLGRVFSFPASFVASPLLLEDCNKIASCDLPYSTFY--ANSQVIDK 264
Query: 334 FLRYMHY 354
F Y Y
Sbjct: 265 FSEYFAY 271
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +1
Query: 496 DGEKVAIILLDTQGAFDSESTVRDCATVFALSTMLSSVQIYNLSQNIQ 639
D K + IL D +GAF ++ + D +T+ + +SV++YN + ++
Sbjct: 317 DAIKASPILAD-EGAFYAKHLILDLSTLSPAVSGPNSVKVYNSAATLE 363
>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 177 CPGRRHRPRPYVHPGRGGPQVSAPE 251
C G H P V GRGGP++ A E
Sbjct: 398 CKGEDH---PNVGTGRGGPEIDALE 419
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,321
Number of Sequences: 5004
Number of extensions: 43915
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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