Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3k08
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0300 + 32967935-32968029,32968975-32969077,32969175-329692... 46 1e-07
07_01_0584 + 4345134-4345237,4346165-4346267,4346397-4346466,434... 50 2e-06
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869... 46 2e-05
02_05_0767 + 31609773-31610174,31610409-31610501,31610608-316106... 32 0.33
02_01_0286 + 1921049-1921726 31 0.58
10_01_0150 + 1747424-1747758,1748097-1748103 30 1.8
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 29 2.4
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081... 29 2.4
06_01_0378 - 2717010-2717565,2718165-2718229,2718365-2719117 29 4.1
08_02_0092 + 12265446-12265809,12266147-12266743,12266792-122668... 28 5.4
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 28 5.4
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927 28 7.2
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 28 7.2
12_02_0457 + 19239816-19241319,19241337-19241632,19241729-192418... 27 9.5
11_04_0316 + 16319326-16319832 27 9.5
02_05_0073 - 25602268-25603182,25603273-25604190 27 9.5
01_06_0944 + 33211652-33212427,33212492-33212660,33212825-332129... 27 9.5
01_01_0363 + 2850954-2853675,2853819-2854225 27 9.5
>03_06_0300 +
32967935-32968029,32968975-32969077,32969175-32969244,
32969464-32969581,32969687-32969744,32969831-32969895,
32969990-32969996,32970087-32970147,32970757-32970776,
32970858-32970923,32971126-32971293,32971372-32971629,
32972098-32972310,32972824-32973099
Length = 525
Score = 46.4 bits (105), Expect(2) = 1e-07
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Frame = +1
Query: 454 GILMWSEIFKATLDDGEKVAIILLDTQGAFDS--ESTVRDCATVFALSTMLSSVQIYNLS 627
GI +W + +D G KV+++ LDT+G F+S +S V D +FAL+T+LSSV IYNL
Sbjct: 90 GIWIWGTPVEMDID-GSKVSVLYLDTEG-FESVGKSNVYD-DRIFALATVLSSVLIYNLP 146
Query: 628 QNIQ 639
+ ++
Sbjct: 147 ETVR 150
Score = 27.1 bits (57), Expect(2) = 1e-07
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 274 VVVISVAGAFRKGKSFLLDFFL 339
+ V+ V G +R GKSFLL+ L
Sbjct: 62 IAVVGVIGPYRSGKSFLLNQLL 83
>07_01_0584 +
4345134-4345237,4346165-4346267,4346397-4346466,
4346552-4346590,4346684-4346801,4346894-4346951,
4347031-4347095,4347281-4347341,4347678-4347779,
4348005-4348070,4348399-4348443,4348540-4348797,
4349289-4349501,4350103-4350411,4350461-4350613
Length = 587
Score = 50.0 bits (114), Expect = 2e-06
Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 2/149 (1%)
Frame = +1
Query: 199 PDHTFTLDEEALKSLLLKEDVRDRAVVVISVAGAFRKGKSFLLDFFLRYMHYKYXXXXXX 378
PDH T A + L + + + + ++V G +R GKSFLL+ L K
Sbjct: 41 PDHGHTKLRLAKEGLEAIKRI-ETPIAAVAVIGPYRSGKSFLLNQLLSLTCNK------- 92
Query: 379 XXXXXXXXDPLQGFSWRGGSERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDS--E 552
GF + T GI +W + ++ G KV+++ LDT+G F+S +
Sbjct: 93 ------------GFGVGHMRDTKTKGIWVWGTPIELDVN-GSKVSVLYLDTEG-FESIGK 138
Query: 553 STVRDCATVFALSTMLSSVQIYNLSQNIQ 639
S V D +FAL+T+LSS+ IYNL + I+
Sbjct: 139 SNVYD-DRIFALATVLSSILIYNLPETIR 166
>05_07_0116 -
27785083-27786123,27786201-27786278,27786364-27786976,
27787128-27787213,27787316-27787438,27787600-27787734,
27787930-27788019,27788796-27788981,27789560-27789661,
27789787-27789900,27790010-27790153,27790260-27790325,
27790895-27791056,27791668-27791916
Length = 1062
Score = 46.4 bits (105), Expect = 2e-05
Identities = 43/137 (31%), Positives = 62/137 (45%)
Frame = +1
Query: 211 FTLDEEALKSLLLKEDVRDRAVVVISVAGAFRKGKSFLLDFFLRYMHYKYXXXXXXXXXX 390
F +D EA+ +L L + V V+SV G R+GKSF+L+ L
Sbjct: 47 FVMDPEAVAALQLVKG----PVGVVSVCGRARQGKSFVLNQLLGRS-------------- 88
Query: 391 XXXXDPLQGFSWRGGSERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDSESTVRDC 570
GF T G+ MWS K T DG + ++LLDT+G + T
Sbjct: 89 -------SGFQVAPTHRPCTKGLWMWSAPLKRTGLDGTEYNLVLLDTEGIDAYDQTGTYS 141
Query: 571 ATVFALSTMLSSVQIYN 621
+F+L+ +LSS+ IYN
Sbjct: 142 IQIFSLAVLLSSMFIYN 158
>02_05_0767 +
31609773-31610174,31610409-31610501,31610608-31610668,
31610797-31610865,31611274-31611440
Length = 263
Score = 32.3 bits (70), Expect = 0.33
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = -2
Query: 329 SNKKDFPFLKAPATDITTTALSLTSSFRSRDLRASSSRVNVWSGPVSTTWTPCGPRGAGA 150
SN P + P +T A S +SS S +S+S WS PV+T+ G GA
Sbjct: 15 SNPIPSPPVAKPGRPLTVAACSNSSSSSSSSSPSSTSCSAAWSLPVATSAGRRGLLALGA 74
Query: 149 GF 144
GF
Sbjct: 75 GF 76
>02_01_0286 + 1921049-1921726
Length = 225
Score = 31.5 bits (68), Expect = 0.58
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +3
Query: 78 LKNTQRNCRSMMT*SDDGTCDREAGAGTAWAARCP--GRRHRPRPYVHPGRGGPQVSAPE 251
+K +R R ++DG D AG T AA GRRHR GRGG
Sbjct: 119 VKRRRRRGRGCTCEAEDG--DGTAGRHTGEAAEAAGGGRRHRIETRA-TGRGGAATGRRG 175
Query: 252 RRCQRQSRGR 281
RR +R++ GR
Sbjct: 176 RRLKRENGGR 185
>10_01_0150 + 1747424-1747758,1748097-1748103
Length = 113
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +3
Query: 147 AGAGTAWAARCPGRRHRPRPYVHPGRGGPQVSAPERRCQRQSRGRYISCRS 299
AGAG A CP PR R P+ P R+C GR I CR+
Sbjct: 68 AGAG---AVACPPTS--PRLTAASARAPPRTCLPHRQCPEVQPGRSIRCRN 113
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +1
Query: 436 SERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDSESTVRDCATVFALSTMLSSVQI 615
+E + G+ + ++FK LDDG VAI +L+ Q S +C V ++ + ++I
Sbjct: 750 NEDNLLGVGSFGKVFKGRLDDGLVVAIKILNMQVERAIRSFDAEC-HVLRMARHRNLIKI 808
Query: 616 YNLSQNI 636
N N+
Sbjct: 809 LNTCSNL 815
>11_08_0032 -
27807489-27807497,27807641-27807684,27808046-27808168,
27810770-27810983,27811382-27811530,27811719-27812618,
27812964-27814659
Length = 1044
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +1
Query: 436 SERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDSESTVRDCATVFALSTMLSSVQI 615
+E + G+ + ++FK LDDG VAI +L+ Q S +C V ++ + ++I
Sbjct: 695 NEDNLLGVGSFGKVFKGRLDDGLVVAIKILNMQVERAIRSFDAEC-HVLRMARHRNLIKI 753
Query: 616 YNLSQNI 636
N N+
Sbjct: 754 LNTCSNL 760
>06_01_0378 - 2717010-2717565,2718165-2718229,2718365-2719117
Length = 457
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +3
Query: 150 GAGTAWAARCPGRRHRPRPYVHPGRGG-PQVSAPE 251
G GTA A CP P P P GG P S P+
Sbjct: 29 GNGTAAPATCPATPPSPPPTSKPATGGEPAASCPD 63
>08_02_0092 +
12265446-12265809,12266147-12266743,12266792-12266861,
12267325-12267427
Length = 377
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/32 (28%), Positives = 14/32 (43%)
Frame = -3
Query: 637 GCFARGCISERTTASWTERTRSRSLAPWIHCR 542
G CI + + W+ + S A W+ CR
Sbjct: 221 GSLGFACIEDSSLYVWSRKVNSEGAAEWVQCR 252
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 282 NDHGSVSDIFFQEQRLEGLLVQGERMVGAGVDDLDTV 172
++ G V + F+E+ + GE+ GAG D+L T+
Sbjct: 116 SEKGDVFEEIFKEEAATAAVASGEKAPGAGADELWTL 152
>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
Length = 229
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 150 GAGTAWAAR-CPGRRHRPRPYVHPGRGGPQVSAPERRCQRQSRGR 281
GA TA +AR C RRH PR + P P ER + + RGR
Sbjct: 80 GAATAGSARNCRRRRHHPRIRLRP---PPTRRHCEREREMRGRGR 121
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Frame = -2
Query: 248 RSRDLRASSSRV------NVWSGPVSTTWTPCGPRGAGAGFSVTCAII 123
R R R+SSSR+ + W P P P GAG + T II
Sbjct: 54 RRRRRRSSSSRLLGPDIPDTWDSPPRAAARPSPPSGAGVDYDSTATII 101
>12_02_0457 +
19239816-19241319,19241337-19241632,19241729-19241829,
19241939-19242029,19242158-19242268,19242360-19242425,
19242457-19242462
Length = 724
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +3
Query: 141 REAGAGTAWAARCPGRRHRPRPYV---HPGRGGPQVSAPERRCQRQSRGR 281
R A T AA G R RP Y H + GP P RC+R+ R R
Sbjct: 128 RRRFAATVAAASRLGFRRRPPLYEQSPHRRQPGPSPPPPPPRCRRRGRPR 177
>11_04_0316 + 16319326-16319832
Length = 168
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 627 REVVYLNGRQHRGQSEHGRAVSHRGFTVEG 538
R V G + GQS H A +HRG V G
Sbjct: 105 RSAVMAFGEGNNGQSNHHEATNHRGKAVWG 134
>02_05_0073 - 25602268-25603182,25603273-25604190
Length = 610
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 129 GTCDREAGAGTAWAARCPGRR-HRPRPYVHPGRGGPQVSAPERRCQRQSRGRYIS 290
G+ +R +G G+ A+R PGRR P P G E R RQ G+ +S
Sbjct: 171 GSRERSSGGGSRRASRSPGRRAEGVSPAPAPAGSGGGGGGGE-RVVRQQPGKMVS 224
>01_06_0944 +
33211652-33212427,33212492-33212660,33212825-33212936,
33213061-33213159,33213237-33213394,33214911-33215062,
33215162-33215249,33215399-33215476,33215516-33215690,
33216701-33217002
Length = 702
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 445 DTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDSESTVRD 567
DT+GILM+ + DG + + GA D+E+T+ D
Sbjct: 97 DTSGILMFDTSGNLVILDGRGSSFTVAYGSGAKDTEATILD 137
>01_01_0363 + 2850954-2853675,2853819-2854225
Length = 1042
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 436 SERDTTGILMWSEIFKATL-DDGEKVAIILLDTQGAFDSESTVRDC 570
SE + G + ++K TL D+GE VAI + D + S S +C
Sbjct: 722 SEANLLGKGRYGSVYKCTLQDEGEPVAIKVFDLKQLGSSRSFQAEC 767
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,251,355
Number of Sequences: 37544
Number of extensions: 348723
Number of successful extensions: 1452
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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